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Source database (GenBank or RefSeq) File type

ASM1683550v1

Organism name:

Polypterus senegalus (gray bichir)

Isolate:

Bchr_013

BioSample:

SAMN13737739

BioProject:

PRJNA599026

Submitter:

BGI

Date:

2021/02/09

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_016835505.1 (latest)

RefSeq assembly accession:

GCF_016835505.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAATIS01

Assembly method:

Wtdbg2 v. MAY-2019

Expected final version:

yes

Genome coverage:

64.0x

Sequencing technology:

Oxford Nanopore GridION

IDs: 9269961 [UID] 24948538 [GenBank] 25053388 [RefSeq]

See Genome Information for Polypterus senegalus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_016835505.1	≠	GCF_016835505.1	ASM1683550v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	3,673,880,163
Total ungapped length	3,672,297,163
Gaps between scaffolds	0
Number of scaffolds	9,856
Scaffold N50	189,689,183
Scaffold L50	8
Number of contigs	13,022
Contig N50	4,528,139
Contig L50	185
Total number of chromosomes and plasmids	19
Number of component sequences (WGS or clone)	9,856

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM029055.1	=	NC_053154.1	0
Chromosome 2	CM029056.1	=	NC_053155.1	0
Chromosome 3	CM029057.1	=	NC_053156.1	0
Chromosome 4	CM029058.1	=	NC_053157.1	0
Chromosome 5	CM029059.1	=	NC_053158.1	0
Chromosome 6	CM029060.1	=	NC_053159.1	0
Chromosome 7	CM029061.1	=	NC_053160.1	0
Chromosome 8	CM029062.1	=	NC_053161.1	0
Chromosome 9	CM029063.1	=	NC_053162.1	0
Chromosome 10	CM029064.1	=	NC_053163.1	0
Chromosome 11	CM029065.1	=	NC_053164.1	0
Chromosome 12	CM029066.1	=	NC_053165.1	0
Chromosome 13	CM029067.1	=	NC_053166.1	0
Chromosome 14	CM029068.1	=	NC_053167.1	0
Chromosome 15	CM029069.1	=	NC_053168.1	0
Chromosome 16	CM029070.1	=	NC_053169.1	0
Chromosome 17	CM029071.1	=	NC_053170.1	0
Chromosome 18	CM029072.1	=	NC_053171.1	0
unplaced	n/a	n/a	n/a	9,837

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	3,673,863,536	9,855	3,672,280,536	189,689,183	3,166
Chromosome 1	341,362,143	1	341,209,143	341,362,143	306
Chromosome 2	323,558,190	1	323,371,190	323,558,190	374
Chromosome 3	306,674,886	1	306,455,386	306,674,886	439
Chromosome 4	254,417,793	1	254,258,293	254,417,793	319
Chromosome 5	208,624,034	1	208,560,534	208,624,034	127
Chromosome 6	194,358,651	1	194,319,651	194,358,651	78
Chromosome 7	192,838,057	1	192,782,057	192,838,057	112
Chromosome 8	189,689,183	1	189,561,183	189,689,183	256
Chromosome 9	183,363,561	1	183,306,561	183,363,561	114
Chromosome 10	181,559,541	1	181,458,541	181,559,541	202
Chromosome 11	168,182,948	1	168,118,948	168,182,948	128
Chromosome 12	165,694,361	1	165,632,861	165,694,361	123
Chromosome 13	163,732,318	1	163,675,318	163,732,318	114
Chromosome 14	146,149,671	1	146,091,671	146,149,671	116
Chromosome 15	138,083,712	1	138,018,712	138,083,712	130
Chromosome 16	104,471,069	1	104,436,569	104,471,069	69
Chromosome 17	101,599,783	1	101,551,783	101,599,783	96
Chromosome 18	99,503,899	1	99,474,399	99,503,899	59
unplaced	209,999,736	9,837	209,997,736	30,523	4

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ASM1683550v1

See Genome Information for Polypterus senegalus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear