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ASM1685928v1

Organism name:
Xiphias gladius (swordfish)
Infraspecific name:
Breed: wild
Infraspecific name:
Ecotype: Sanya
Isolate:
SHS-SW01
Sex:
male
BioSample:
SAMN16522248
BioProject:
PRJNA670841
Submitter:
Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences
Date:
2021/02/12
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_016859285.1 (latest)
RefSeq assembly accession:
GCF_016859285.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 1 unlocalized scaffold on chromosome MT
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JADGDB01
Assembly method:
NextDenovo v. 2.0; wdtbg v. 2.0; 3D-DNA v. 180114
Expected final version:
yes
Genome coverage:
79x
Sequencing technology:
Oxford Nanopore GridION; Illumina HiSeq; Illumina

IDs: 9284781 [UID] 24992308 [GenBank] 25500498 [RefSeq]

See Genome Information for Xiphias gladius

History (Show revision history)

Comment

Global statistics

Total sequence length691,780,295
Total ungapped length691,555,795
Gaps between scaffolds0
Number of scaffolds1,482
Scaffold N5029,220,096
Scaffold L5011
Number of contigs1,931
Contig N505,252,707
Contig L5036
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)1,482

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_016859325.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG1CM029135.1=NC_053400.10
Linkage Group LG2CM029136.1=NC_053401.10
Linkage Group LG3CM029137.1=NC_053402.10
Linkage Group LG4CM029138.1=NC_053403.10
Linkage Group LG5CM029139.1=NC_053404.10
Linkage Group LG6CM029140.1=NC_053405.10
Linkage Group LG7CM029141.1=NC_053406.10
Linkage Group LG8CM029142.1=NC_053407.10
Linkage Group LG9CM029143.1=NC_053408.10
Linkage Group LG10CM029144.1=NC_053409.10
Linkage Group LG11CM029145.1=NC_053410.10
Linkage Group LG12CM029146.1=NC_053411.10
Linkage Group LG13CM029147.1=NC_053412.10
Linkage Group LG14CM029148.1=NC_053413.10
Linkage Group LG15CM029149.1=NC_053414.10
Linkage Group LG16CM029150.1=NC_053415.10
Linkage Group LG17CM029151.1=NC_053416.10
Linkage Group LG18CM029152.1=NC_053417.10
Linkage Group LG19CM029153.1=NC_053418.10
Linkage Group LG20CM029154.1=NC_053419.10
Linkage Group LG21CM029155.1=NC_053420.10
Linkage Group LG22CM029156.1=NC_053421.10
Linkage Group LG23CM029157.1=NC_053422.10
Linkage Group LG24CM029158.1=NC_053423.10
unplacedn/an/an/a1,457

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All691,763,7751,481691,539,27529,220,0964490
Linkage Group LG135,626,355135,608,85535,626,355350
Linkage Group LG222,596,604122,586,10422,596,604210
Linkage Group LG326,136,583126,124,58326,136,583240
Linkage Group LG426,531,343126,526,34326,531,343100
Linkage Group LG523,628,845123,618,34523,628,845210
Linkage Group LG631,449,284131,438,78431,449,284210
Linkage Group LG729,433,144129,425,14429,433,144160
Linkage Group LG831,651,644131,628,14431,651,644470
Linkage Group LG923,848,212123,840,71223,848,212150
Linkage Group LG1027,897,918127,892,91827,897,918100
Linkage Group LG1128,636,836128,632,33628,636,83690
Linkage Group LG1219,814,907119,810,40719,814,90790
Linkage Group LG1314,985,604114,977,10414,985,604170
Linkage Group LG1426,877,059126,876,05926,877,05920
Linkage Group LG1533,937,260133,931,76033,937,260110
Linkage Group LG1629,220,096129,220,09629,220,09600
Linkage Group LG1728,281,867128,277,36728,281,86790
Linkage Group LG1830,564,377130,554,37730,564,377200
Linkage Group LG1931,038,257131,027,25731,038,257220
Linkage Group LG2025,657,956125,651,95625,657,956120
Linkage Group LG2133,252,044133,248,04433,252,04480
Linkage Group LG2230,511,599130,505,09930,511,599130
Linkage Group LG2330,436,000130,428,00030,436,000160
Linkage Group LG2426,537,364126,527,36426,537,364200
unplaced23,212,6171,45723,182,11747,300610
MoleculeTotal
Length
Mitochondrion MT16,520