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ASM1690701v1

Organism name:
Oceanisphaera litoralis (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 15406
BioSample:
SAMN17620117
BioProject:
PRJNA632325
Submitter:
DOE Joint Genome Institute
Date:
2021/02/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_016907015.1 (latest)
RefSeq assembly accession:
GCF_016907015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAFBBE01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
no
Genome coverage:
337.0x
Sequencing technology:
Illumina

IDs: 9299011 [UID] 25036288 [GenBank] 25063898 [RefSeq]

See Genome Information for Oceanisphaera litoralis

History (Show revision history)

Comment

Global statistics

Total sequence length3,356,276
Total ungapped length3,355,789
Gaps between scaffolds0
Number of scaffolds63
Scaffold N50114,352
Scaffold L5010
Number of contigs68
Contig N50105,415
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)63

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,356,276633,355,789114,35250

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Oceanisphaera litoralisOceanisphaera litoralis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014652055.1Oceanisphaera arcticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.2370.7366.84

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected