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ASM1734935v1

Organism name:
Thiothrix fructosivorans (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 49748
BioSample:
SAMN18095003
BioProject:
PRJNA631701
Submitter:
NEB
Date:
2021/03/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_017349355.1 (latest)
RefSeq assembly accession:
GCF_017349355.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAFMPM01
Assembly method:
HGAP v. 2.3.0
Expected final version:
yes
Genome coverage:
421.48x
Sequencing technology:
PacBio RSII

IDs: 9522841 [UID] 25541928 [GenBank] 25549848 [RefSeq]

See Genome Information for Thiothrix fructosivorans

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from ATCC 49748

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/08/2021 17:28:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,251
CDSs (total)::4,197
Genes (coding)::4,105
CDSs (with protein)::4,105
Genes (RNA)::54
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::44
ncRNAs::4
Pseudo Genes (total)::92
CDSs (without protein)::92
Pseudo Genes (ambiguous residues)::0 of 92
Pseudo Genes (frameshifted)::43 of 92
Pseudo Genes (incomplete)::49 of 92
Pseudo Genes (internal stop)::6 of 92
Pseudo Genes (multiple problems)::6 of 92
CRISPR Arrays::12
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,355,037
Total ungapped length4,355,037
Number of contigs8
Contig N501,467,533
Contig L502
Total number of chromosomes and plasmids5
Number of component sequences (WGS or clone)8

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_017349365.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Plasmid pTfr2JAFMPM010000001.1=NZ_JAFMPM010000001.10
Plasmid pTfr12JAFMPM010000002.1=NZ_JAFMPM010000002.10
Plasmid pTfr21JAFMPM010000003.1=NZ_JAFMPM010000003.10
Plasmid pTfr153JAFMPM010000004.1=NZ_JAFMPM010000004.10
Plasmid pTfr446JAFMPM010000005.1=NZ_JAFMPM010000005.10
unplacedn/an/an/a3

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
All4,355,03784,355,0371,467,53300
Plasmid pTfr22,34112,3412,34100
Plasmid pTfr1212,657112,65712,65700
Plasmid pTfr2121,013121,01321,01300
Plasmid pTfr153153,5781153,578153,57800
Plasmid pTfr446446,4801446,480446,48000
unplaced3,718,96833,718,9681,938,43700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thiothrix fructosivoransThiothrix fructosivorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017901175.1Thiothrix unziitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.2321.3424.95

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected