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ASM1749806v1

Organism name:
Oceanisphaera pacifica (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DM8
BioSample:
SAMN18271144
BioProject:
PRJNA713839
Submitter:
Shandong University at Weihai
Date:
2021/03/20
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_017498065.1 (latest)
RefSeq assembly accession:
GCF_017498065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAGDFX01
Assembly method:
SOAPdenovo v. 2.3
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina

IDs: 9597301 [UID] 25701548 [GenBank] 25773098 [RefSeq]

See Genome Information for Oceanisphaera pacifica

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/15/2021 17:11:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,871
CDSs (total)::2,768
Genes (coding)::2,742
CDSs (with protein)::2,742
Genes (RNA)::103
rRNAs::6, 3, 7 (5S, 16S, 23S)
complete rRNAs::4, 1 (5S, 16S)
partial rRNAs::2, 2, 7 (5S, 16S, 23S)
tRNAs::83
ncRNAs::4
Pseudo Genes (total)::26
CDSs (without protein)::26
Pseudo Genes (ambiguous residues)::0 of 26
Pseudo Genes (frameshifted)::14 of 26
Pseudo Genes (incomplete)::14 of 26
Pseudo Genes (internal stop)::6 of 26
Pseudo Genes (multiple problems)::7 of 26
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,109,059
Total ungapped length3,109,059
Number of contigs37
Contig N50197,365
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)37

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,109,059373,109,059197,36500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Oceanisphaera pacificaOceanisphaera pacifica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002157895.1Oceanisphaera profundatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.2515.9114.10

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected