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Source database (GenBank or RefSeq) File type

ASM1759143v1

Organism name:

Portunus trituberculatus (swimming crab)

Isolate:

SZX2019

BioSample:

SAMN12306490

BioProject:

PRJNA555262

Submitter:

Center for Ecological and Environmental Sciences

Date:

2021/03/30

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_017591435.1 (latest)

RefSeq assembly accession:

GCF_017591435.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAGGDN01

Assembly method:

Wtdbg v. 2.1

Expected final version:

yes

Genome coverage:

54.74x

Sequencing technology:

Oxford Nanopore; Illumina

IDs: 9678711 [UID] 25887368 [GenBank] 30256288 [RefSeq]

See Genome Information for Portunus trituberculatus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_017591435.1	≠	GCF_017591435.1	ASM1759143v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,005,062,047
Total ungapped length	1,004,100,547
Gaps between scaffolds	0
Number of scaffolds	524
Scaffold N50	21,793,880
Scaffold L50	17
Number of contigs	2,447
Contig N50	4,121,416
Contig L50	71
Total number of chromosomes and plasmids	51
Number of component sequences (WGS or clone)	524

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM030071.1	=	NC_059255.1	0
Chromosome 2	CM030072.1	=	NC_059256.1	0
Chromosome 3	CM030073.1	=	NC_059257.1	0
Chromosome 4	CM030074.1	=	NC_059258.1	0
Chromosome 5	CM030075.1	=	NC_059259.1	0
Chromosome 6	CM030076.1	=	NC_059260.1	0
Chromosome 7	CM030077.1	=	NC_059261.1	0
Chromosome 8	CM030078.1	=	NC_059262.1	0
Chromosome 9	CM030079.1	=	NC_059263.1	0
Chromosome 10	CM030080.1	=	NC_059264.1	0
Chromosome 11	CM030081.1	=	NC_059265.1	0
Chromosome 12	CM030082.1	=	NC_059266.1	0
Chromosome 13	CM030083.1	=	NC_059267.1	0
Chromosome 14	CM030084.1	=	NC_059268.1	0
Chromosome 15	CM030085.1	=	NC_059269.1	0
Chromosome 16	CM030086.1	=	NC_059270.1	0
Chromosome 17	CM030087.1	=	NC_059271.1	0
Chromosome 18	CM030088.1	=	NC_059272.1	0
Chromosome 19	CM030089.1	=	NC_059273.1	0
Chromosome 20	CM030090.1	=	NC_059274.1	0
Chromosome 21	CM030091.1	=	NC_059275.1	0
Chromosome 22	CM030092.1	=	NC_059276.1	0
Chromosome 23	CM030093.1	=	NC_059277.1	0
Chromosome 24	CM030094.1	=	NC_059278.1	0
Chromosome 25	CM030095.1	=	NC_059279.1	0
Chromosome 26	CM030096.1	=	NC_059280.1	0
Chromosome 27	CM030097.1	=	NC_059281.1	0
Chromosome 28	CM030098.1	=	NC_059282.1	0
Chromosome 29	CM030099.1	=	NC_059283.1	0
Chromosome 30	CM030100.1	=	NC_059284.1	0
Chromosome 31	CM030101.1	=	NC_059285.1	0
Chromosome 32	CM030102.1	=	NC_059286.1	0
Chromosome 33	CM030103.1	=	NC_059287.1	0
Chromosome 34	CM030104.1	=	NC_059288.1	0
Chromosome 35	CM030105.1	=	NC_059289.1	0
Chromosome 36	CM030106.1	=	NC_059290.1	0
Chromosome 37	CM030107.1	=	NC_059291.1	0
Chromosome 38	CM030108.1	=	NC_059292.1	0
Chromosome 39	CM030109.1	=	NC_059293.1	0
Chromosome 40	CM030110.1	=	NC_059294.1	0
Chromosome 41	CM030111.1	=	NC_059295.1	0
Chromosome 42	CM030112.1	=	NC_059296.1	0
Chromosome 43	CM030113.1	=	NC_059297.1	0
Chromosome 44	CM030114.1	=	NC_059298.1	0
Chromosome 45	CM030115.1	=	NC_059299.1	0
Chromosome 46	CM030116.1	=	NC_059300.1	0
Chromosome 47	CM030117.1	=	NC_059301.1	0
Chromosome 48	CM030118.1	=	NC_059302.1	0
Chromosome 49	CM030119.1	=	NC_059303.1	0
Chromosome 50	CM030120.1	=	NC_059304.1	0
unplaced	n/a	n/a	n/a	473

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,005,046,021	523	1,004,084,521	21,793,880	1,923
Chromosome 1	6,801,519	1	6,791,019	6,801,519	21
Chromosome 2	13,909,200	1	13,878,200	13,909,200	62
Chromosome 3	10,158,951	1	10,129,451	10,158,951	59
Chromosome 4	8,581,979	1	8,571,479	8,581,979	21
Chromosome 5	11,256,687	1	11,243,187	11,256,687	27
Chromosome 6	9,867,398	1	9,861,398	9,867,398	12
Chromosome 7	8,085,266	1	8,079,766	8,085,266	11
Chromosome 8	7,550,507	1	7,550,007	7,550,507	1
Chromosome 9	13,971,342	1	13,960,342	13,971,342	22
Chromosome 10	14,151,211	1	14,140,211	14,151,211	22
Chromosome 11	6,730,153	1	6,601,653	6,730,153	257
Chromosome 12	14,164,360	1	14,150,860	14,164,360	27
Chromosome 13	12,285,065	1	12,276,565	12,285,065	17
Chromosome 14	21,622,326	1	21,568,326	21,622,326	108
Chromosome 15	21,825,099	1	21,806,599	21,825,099	37
Chromosome 16	16,942,622	1	16,933,122	16,942,622	19
Chromosome 17	33,887,922	1	33,876,922	33,887,922	22
Chromosome 18	27,450,777	1	27,443,277	27,450,777	15
Chromosome 19	19,786,189	1	19,782,689	19,786,189	7
Chromosome 20	17,756,556	1	17,750,056	17,756,556	13
Chromosome 21	19,494,137	1	19,484,137	19,494,137	20
Chromosome 22	11,273,125	1	11,269,125	11,273,125	8
Chromosome 23	16,378,840	1	16,367,340	16,378,840	23
Chromosome 24	20,371,438	1	20,365,438	20,371,438	12
Chromosome 25	18,751,408	1	18,744,408	18,751,408	14
Chromosome 26	5,847,757	1	5,819,757	5,847,757	56
Chromosome 27	18,172,300	1	18,144,800	18,172,300	55
Chromosome 28	12,784,577	1	12,781,577	12,784,577	6
Chromosome 29	14,785,251	1	14,773,751	14,785,251	23
Chromosome 30	12,291,475	1	12,283,475	12,291,475	16
Chromosome 31	27,702,984	1	27,669,484	27,702,984	67
Chromosome 32	16,283,586	1	16,277,086	16,283,586	13
Chromosome 33	17,720,624	1	17,709,624	17,720,624	22
Chromosome 34	12,697,713	1	12,676,713	12,697,713	42
Chromosome 35	21,343,038	1	21,323,538	21,343,038	39
Chromosome 36	12,712,161	1	12,696,161	12,712,161	32
Chromosome 37	33,242,319	1	33,201,319	33,242,319	82
Chromosome 38	38,839,762	1	38,820,262	38,839,762	39
Chromosome 39	22,338,078	1	22,329,078	22,338,078	18
Chromosome 40	29,382,946	1	29,374,446	29,382,946	17
Chromosome 41	42,710,960	1	42,687,460	42,710,960	47
Chromosome 42	31,792,048	1	31,777,548	31,792,048	29
Chromosome 43	26,812,371	1	26,805,371	26,812,371	14
Chromosome 44	30,753,393	1	30,740,393	30,753,393	26
Chromosome 45	15,010,712	1	14,999,712	15,010,712	22
Chromosome 46	33,906,160	1	33,880,660	33,906,160	51
Chromosome 47	38,170,672	1	38,143,672	38,170,672	54
Chromosome 48	30,197,846	1	30,177,346	30,197,846	41
Chromosome 49	21,793,880	1	21,789,880	21,793,880	8
Chromosome 50	32,585,247	1	32,537,247	32,585,247	96
unplaced	22,114,084	473	22,038,584	199,450	151

Assembly

Genome Assembly

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ASM1759143v1

See Genome Information for Portunus trituberculatus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear