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Source database (GenBank or RefSeq) File type

fMelBoe1.pri

Organism name:

Melanotaenia boesemani (Boeseman's rainbowfish)

Isolate:

fMelBoe1

BioSample:

SAMN12623618

BioProject:

PRJNA561965

Submitter:

Vertebrate Genomes Project

Date:

2021/03/30

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_017639745.1 (latest)

RefSeq assembly accession:

GCF_017639745.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

JAGFVI01

Assembly method:

FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v. 0.3.2; pbgcpp v. 1.9.0; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-12; VGP assembly pipeline v. 1.6

Expected final version:

Genome coverage:

60.0x

Sequencing technology:

PacBio Sequel CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

Linked assembly:

GCA_017639755.1 (alternate pseudohaplotype of diploid)

IDs: 9679391 [UID] 25887838 [GenBank] 27103198 [RefSeq]

See Genome Information for Melanotaenia boesemani

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_017639745.1	≠	GCF_017639745.1	fMelBoe1.pri	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	865,592,457
Total ungapped length	862,374,556
Gaps between scaffolds	0
Number of scaffolds	93
Scaffold N50	37,878,235
Scaffold L50	11
Number of contigs	533
Contig N50	9,299,978
Contig L50	28
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	93

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM030225.1	=	NC_055682.1	1
Chromosome 2	CM030226.1	=	NC_055683.1	8
Chromosome 3	CM030227.1	=	NC_055684.1	0
Chromosome 4	CM030228.1	=	NC_055685.1	0
Chromosome 5	CM030229.1	=	NC_055686.1	0
Chromosome 6	CM030230.1	=	NC_055687.1	0
Chromosome 7	CM030231.1	=	NC_055688.1	0
Chromosome 8	CM030232.1	=	NC_055689.1	0
Chromosome 9	CM030233.1	=	NC_055690.1	0
Chromosome 10	CM030234.1	=	NC_055691.1	0
Chromosome 11	CM030235.1	=	NC_055692.1	0
Chromosome 12	CM030236.1	=	NC_055693.1	0
Chromosome 13	CM030237.1	=	NC_055694.1	0
Chromosome 14	CM030238.1	=	NC_055695.1	0
Chromosome 15	CM030239.1	=	NC_055696.1	0
Chromosome 16	CM030240.1	=	NC_055697.1	0
Chromosome 17	CM030241.1	=	NC_055698.1	0
Chromosome 18	CM030242.1	=	NC_055699.1	0
Chromosome 19	CM030243.1	=	NC_055700.1	0
Chromosome 20	CM030244.1	=	NC_055701.1	0
Chromosome 21	CM030245.1	=	NC_055702.1	0
Chromosome 22	CM030246.1	=	NC_055703.1	0
Chromosome 23	CM030247.1	=	NC_055704.1	0
Chromosome 24	CM030248.1	=	NC_055705.1	0
unplaced	n/a	n/a	n/a	59

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	865,575,964	92	862,358,063	37,878,235	440	0
Chromosome 1	AllAssembled moleculeUnlocalized scaffolds	44,791,43244,752,30939,123	211	44,789,03544,749,91239,123	44,752,30944,752,30939,123	12120	000
Chromosome 2	AllAssembled moleculeUnlocalized scaffolds	43,703,27241,708,0931,995,179	918	42,496,54040,551,3321,945,208	41,708,09341,708,093355,389	53503	000
Chromosome 3	Assembled molecule	41,079,705	1	41,075,725	41,079,705	22	0
Chromosome 4	Assembled molecule	40,591,798	1	40,533,257	40,591,798	18	0
Chromosome 5	Assembled molecule	39,487,013	1	39,041,004	39,487,013	41	0
Chromosome 6	Assembled molecule	39,467,289	1	39,464,279	39,467,289	16	0
Chromosome 7	Assembled molecule	39,286,078	1	39,262,874	39,286,078	11	0
Chromosome 8	Assembled molecule	38,212,551	1	38,191,166	38,212,551	24	0
Chromosome 9	Assembled molecule	38,003,748	1	37,942,195	38,003,748	22	0
Chromosome 10	Assembled molecule	37,933,747	1	37,857,189	37,933,747	9	0
Chromosome 11	Assembled molecule	37,878,235	1	37,826,644	37,878,235	11	0
Chromosome 12	Assembled molecule	37,374,654	1	37,372,825	37,374,654	10	0
Chromosome 13	Assembled molecule	36,977,950	1	36,808,912	36,977,950	26	0
Chromosome 14	Assembled molecule	35,463,915	1	35,460,970	35,463,915	10	0
Chromosome 15	Assembled molecule	35,304,873	1	35,045,767	35,304,873	13	0
Chromosome 16	Assembled molecule	34,710,959	1	34,709,160	34,710,959	12	0
Chromosome 17	Assembled molecule	34,685,522	1	34,603,256	34,685,522	14	0
Chromosome 18	Assembled molecule	33,715,480	1	33,700,132	33,715,480	17	0
Chromosome 19	Assembled molecule	31,819,648	1	31,699,607	31,819,648	15	0
Chromosome 20	Assembled molecule	30,782,128	1	30,780,131	30,782,128	11	0
Chromosome 21	Assembled molecule	30,537,004	1	30,522,831	30,537,004	14	0
Chromosome 22	Assembled molecule	29,426,028	1	29,120,915	29,426,028	13	0
Chromosome 23	Assembled molecule	27,050,739	1	27,050,739	27,050,739	0	0
Chromosome 24	Assembled molecule	24,494,574	1	24,206,246	24,494,574	38	0
unplaced	Assembled molecule	2,797,622	59	2,796,664	65,462	8	0

Assembly

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fMelBoe1.pri

See Genome Information for Melanotaenia boesemani

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear