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Source database (GenBank or RefSeq) File type

ASM1765450v1

Organism name:

Polyodon spathula (Mississippi paddlefish)

Isolate:

WHYD16114869_AA

BioSample:

SAMN09842169

BioProject:

PRJNA484687

Submitter:

Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences

Date:

2021/03/31

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_017654505.1 (latest)

RefSeq assembly accession:

GCF_017654505.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JADDYA01

Assembly method:

SSPACE v. 3.0

Expected final version:

yes

Genome coverage:

300.0x

Sequencing technology:

Illumina HiSeq

IDs: 9686661 [UID] 25905738 [GenBank] 26539058 [RefSeq]

See Genome Information for Polyodon spathula

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_017654505.1	≠	GCF_017654505.1	ASM1765450v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,542,083,420
Total ungapped length	1,540,386,958
Gaps between scaffolds	0
Number of scaffolds	4,235
Scaffold N50	48,906,729
Scaffold L50	10
Number of contigs	7,192
Contig N50	3,441,286
Contig L50	136
Total number of chromosomes and plasmids	61
Number of component sequences (WGS or clone)	7,192

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM030250.1	=	NC_054534.1	0
Chromosome 2	CM030251.1	=	NC_054535.1	0
Chromosome 3	CM030252.1	=	NC_054536.1	0
Chromosome 4	CM030253.1	=	NC_054537.1	0
Chromosome 5	CM030254.1	=	NC_054538.1	0
Chromosome 6	CM030255.1	=	NC_054539.1	0
Chromosome 7	CM030256.1	=	NC_054540.1	0
Chromosome 8	CM030257.1	=	NC_054541.1	0
Chromosome 9	CM030258.1	=	NC_054542.1	0
Chromosome 10	CM030259.1	=	NC_054543.1	0
Chromosome 11	CM030260.1	=	NC_054544.1	0
Chromosome 12	CM030261.1	=	NC_054545.1	0
Chromosome 13	CM030262.1	=	NC_054546.1	0
Chromosome 14	CM030263.1	=	NC_054547.1	0
Chromosome 15	CM030264.1	=	NC_054548.1	0
Chromosome 16	CM030265.1	=	NC_054549.1	0
Chromosome 17	CM030266.1	=	NC_054550.1	0
Chromosome 18	CM030267.1	=	NC_054551.1	0
Chromosome 19	CM030268.1	=	NC_054552.1	0
Chromosome 20	CM030269.1	=	NC_054553.1	0
Chromosome 21	CM030270.1	=	NC_054554.1	0
Chromosome 22	CM030271.1	=	NC_054555.1	0
Chromosome 23	CM030272.1	=	NC_054556.1	0
Chromosome 24	CM030273.1	=	NC_054557.1	0
Chromosome 25	CM030274.1	=	NC_054558.1	0
Chromosome 26	CM030275.1	=	NC_054559.1	0
Chromosome 27	CM030276.1	=	NC_054560.1	0
Chromosome 28	CM030277.1	=	NC_054561.1	0
Chromosome 29	CM030278.1	=	NC_054562.1	0
Chromosome 30	CM030279.1	=	NC_054563.1	0
Chromosome 31	CM030280.1	=	NC_054564.1	0
Chromosome 32	CM030281.1	=	NC_054565.1	0
Chromosome 33	CM030282.1	=	NC_054566.1	0
Chromosome 34	CM030283.1	=	NC_054567.1	0
Chromosome 35	CM030284.1	=	NC_054568.1	0
Chromosome 36	CM030285.1	=	NC_054569.1	0
Chromosome 37	CM030286.1	=	NC_054570.1	0
Chromosome 38	CM030287.1	=	NC_054571.1	0
Chromosome 39	CM030288.1	=	NC_054572.1	0
Chromosome 40	CM030289.1	=	NC_054573.1	0
Chromosome 41	CM030290.1	=	NC_054574.1	0
Chromosome 42	CM030291.1	=	NC_054575.1	0
Chromosome 43	CM030292.1	=	NC_054576.1	0
Chromosome 44	CM030293.1	=	NC_054577.1	0
Chromosome 45	CM030294.1	=	NC_054578.1	0
Chromosome 46	CM030295.1	=	NC_054579.1	0
Chromosome 47	CM030296.1	=	NC_054580.1	0
Chromosome 48	CM030297.1	=	NC_054581.1	0
Chromosome 49	CM030298.1	=	NC_054582.1	0
Chromosome 50	CM030299.1	=	NC_054583.1	0
Chromosome 51	CM030300.1	=	NC_054584.1	0
Chromosome 52	CM030301.1	=	NC_054585.1	0
Chromosome 53	CM030302.1	=	NC_054586.1	0
Chromosome 54	CM030303.1	=	NC_054587.1	0
Chromosome 55	CM030304.1	=	NC_054588.1	0
Chromosome 56	CM030305.1	=	NC_054589.1	0
Chromosome 57	CM030306.1	=	NC_054590.1	0
Chromosome 58	CM030307.1	=	NC_054591.1	0
Chromosome 59	CM030308.1	=	NC_054592.1	0
Chromosome 60	CM030309.1	=	NC_054593.1	0
unplaced	n/a	n/a	n/a	4,174

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,542,066,908	4,234	1,540,370,446	48,906,729	2,957
Chromosome 1	110,695,931	1	110,672,861	110,695,931	53
Chromosome 2	109,144,785	1	109,120,511	109,144,785	49
Chromosome 3	97,728,981	1	97,700,480	97,728,981	54
Chromosome 4	97,683,920	1	97,665,457	97,683,920	41
Chromosome 5	79,736,678	1	79,719,658	79,736,678	36
Chromosome 6	77,129,788	1	77,117,728	77,129,788	30
Chromosome 7	60,062,745	1	60,046,683	60,062,745	36
Chromosome 8	51,486,109	1	51,457,029	51,486,109	62
Chromosome 9	51,467,788	1	51,414,697	51,467,788	107
Chromosome 10	48,906,729	1	48,894,372	48,906,729	23
Chromosome 11	47,460,930	1	47,447,181	47,460,930	32
Chromosome 12	46,395,638	1	46,382,078	46,395,638	33
Chromosome 13	44,691,683	1	44,682,583	44,691,683	20
Chromosome 14	40,010,000	1	39,999,967	40,010,000	19
Chromosome 15	39,459,595	1	39,452,575	39,459,595	16
Chromosome 16	38,798,434	1	38,779,339	38,798,434	42
Chromosome 17	37,789,452	1	37,776,788	37,789,452	27
Chromosome 18	36,461,845	1	36,445,335	36,461,845	34
Chromosome 19	35,381,548	1	35,369,582	35,381,548	23
Chromosome 20	31,174,239	1	31,159,239	31,174,239	30
Chromosome 21	30,713,753	1	30,701,243	30,713,753	26
Chromosome 22	30,616,140	1	30,597,109	30,616,140	35
Chromosome 23	28,219,455	1	28,201,190	28,219,455	38
Chromosome 24	25,507,447	1	25,485,437	25,507,447	45
Chromosome 25	23,830,277	1	23,799,000	23,830,277	48
Chromosome 26	20,904,809	1	20,874,724	20,904,809	61
Chromosome 27	9,729,038	1	9,652,038	9,729,038	154
Chromosome 28	9,260,439	1	9,241,349	9,260,439	38
Chromosome 29	8,904,779	1	8,882,744	8,904,779	45
Chromosome 30	8,649,850	1	8,557,350	8,649,850	185
Chromosome 31	8,604,257	1	8,583,030	8,604,257	22
Chromosome 32	7,546,224	1	7,490,901	7,546,224	107
Chromosome 33	6,465,369	1	6,458,086	6,465,369	14
Chromosome 34	6,355,234	1	6,343,714	6,355,234	25
Chromosome 35	5,872,919	1	5,847,311	5,872,919	34
Chromosome 36	5,854,724	1	5,810,714	5,854,724	89
Chromosome 37	5,264,051	1	5,236,832	5,264,051	53
Chromosome 38	5,181,365	1	5,123,632	5,181,365	102
Chromosome 39	4,987,363	1	4,985,363	4,987,363	4
Chromosome 40	4,462,132	1	4,455,632	4,462,132	13
Chromosome 41	3,843,206	1	3,805,706	3,843,206	75
Chromosome 42	3,506,048	1	3,499,429	3,506,048	14
Chromosome 43	3,469,657	1	3,433,659	3,469,657	44
Chromosome 44	3,407,618	1	3,390,687	3,407,618	34
Chromosome 45	3,177,093	1	3,150,014	3,177,093	54
Chromosome 46	3,024,779	1	2,980,160	3,024,779	53
Chromosome 47	2,910,250	1	2,846,247	2,910,250	90
Chromosome 48	2,657,782	1	2,650,282	2,657,782	15
Chromosome 49	2,655,359	1	2,640,359	2,655,359	30
Chromosome 50	2,600,998	1	2,595,998	2,600,998	10
Chromosome 51	2,368,646	1	2,344,646	2,368,646	48
Chromosome 52	2,152,814	1	2,152,814	2,152,814	0
Chromosome 53	2,085,973	1	2,057,129	2,085,973	47
Chromosome 54	2,067,322	1	2,027,406	2,067,322	33
Chromosome 55	1,908,070	1	1,901,070	1,908,070	14
Chromosome 56	1,842,670	1	1,836,670	1,842,670	12
Chromosome 57	1,702,124	1	1,669,624	1,702,124	65
Chromosome 58	1,287,454	1	1,264,954	1,287,454	45
Chromosome 59	1,186,621	1	1,165,121	1,186,621	43
Chromosome 60	1,183,500	1	1,176,229	1,183,500	7
unplaced	54,432,481	4,174	54,150,700	25,000	319

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ASM1765450v1

See Genome Information for Polyodon spathula

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly Unit Name
Primary Assembly
non-nuclear