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Source database (GenBank or RefSeq) File type

Xenopus_laevis_v10.1

Organism name:

Xenopus laevis (African clawed frog)

Infraspecific name:

Strain: J_2021

Sex:

female

BioSample:

SAMN18035302

BioProject:

PRJNA313213

Submitter:

International Xenopus Sequencing Consortium

Date:

2021/04/12

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_017654675.1 (latest)

RefSeq assembly accession:

GCF_017654675.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAGEVR01

Assembly method:

Canu v. 1.6-132-gf9284f8

Expected final version:

yes

Genome coverage:

28.5x

Sequencing technology:

PacBio RSII

IDs: 9809711 [UID] 26202298 [GenBank] 26275468 [RefSeq]

See Genome Information for Xenopus laevis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_017654675.1	≠	GCF_017654675.1	Xenopus_laevis_v10.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,742,469,346
Total ungapped length	2,740,794,654
Gaps between scaffolds	0
Number of scaffolds	55
Scaffold N50	155,250,555
Scaffold L50	8
Number of contigs	716
Contig N50	22,451,507
Contig L50	35
Total number of chromosomes and plasmids	19
Number of component sequences (WGS or clone)	55

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1L	CM030340.1	=	NC_054371.1	0
Chromosome 1S	CM030341.1	=	NC_054372.1	0
Chromosome 2L	CM030342.1	=	NC_054373.1	0
Chromosome 2S	CM030343.1	=	NC_054374.1	0
Chromosome 3L	CM030344.1	=	NC_054375.1	0
Chromosome 3S	CM030345.1	=	NC_054376.1	0
Chromosome 4L	CM030346.1	=	NC_054377.1	0
Chromosome 4S	CM030347.1	=	NC_054378.1	0
Chromosome 5L	CM030348.1	=	NC_054379.1	0
Chromosome 5S	CM030349.1	=	NC_054380.1	0
Chromosome 6L	CM030350.1	=	NC_054381.1	0
Chromosome 6S	CM030351.1	=	NC_054382.1	0
Chromosome 7L	CM030352.1	=	NC_054383.1	0
Chromosome 7S	CM030353.1	=	NC_054384.1	0
Chromosome 8L	CM030354.1	=	NC_054385.1	0
Chromosome 8S	CM030355.1	=	NC_054386.1	0
Chromosome 9_10L	CM030356.1	=	NC_054387.1	0
Chromosome 9_10S	CM030357.1	=	NC_054388.1	0
unplaced	n/a	n/a	n/a	36

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,742,451,793	54	2,740,777,101	155,250,555	661
Chromosome 1L	233,740,091	1	233,684,759	233,740,091	16
Chromosome 1S	202,412,971	1	202,333,244	202,412,971	48
Chromosome 2L	191,000,147	1	190,950,047	191,000,147	33
Chromosome 2S	169,306,101	1	169,165,300	169,306,101	50
Chromosome 3L	161,426,102	1	161,218,021	161,426,102	101
Chromosome 3S	131,962,817	1	131,884,245	131,962,817	14
Chromosome 4L	155,250,555	1	155,232,162	155,250,555	14
Chromosome 4S	132,731,175	1	132,670,851	132,731,175	23
Chromosome 5L	171,415,385	1	171,318,296	171,415,385	39
Chromosome 5S	143,394,104	1	143,271,766	143,394,104	36
Chromosome 6L	164,223,596	1	164,144,923	164,223,596	29
Chromosome 6S	137,316,287	1	137,273,312	137,316,287	26
Chromosome 7L	139,837,619	1	139,666,372	139,837,619	50
Chromosome 7S	113,060,390	1	112,926,951	113,060,390	58
Chromosome 8L	135,449,134	1	135,360,090	135,449,134	39
Chromosome 8S	103,977,863	1	103,940,943	103,977,863	18
Chromosome 9_10L	137,811,820	1	137,669,340	137,811,820	42
Chromosome 9_10S	117,266,292	1	117,197,135	117,266,292	25
unplaced	869,344	36	869,344	36,359	0

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Xenopus_laevis_v10.1

See Genome Information for Xenopus laevis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear