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Source database (GenBank or RefSeq) File type

fCheRos1.pri

Organism name:

Chelmon rostratus (copperband butterflyfish)

Isolate:

fCheRos1

BioSample:

SAMN12623620

BioProject:

PRJNA561969

Submitter:

Vertebrate Genomes Project

Date:

2021/04/15

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_017976325.1 (latest)

RefSeq assembly accession:

GCF_017976325.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

JAGIYV01

Assembly method:

FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v. 0.3.2; pbgcpp v. 1.9.0; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-24; VGP assembly pipeline v. 1.5

Expected final version:

Genome coverage:

60.0x

Sequencing technology:

PacBio Sequel II CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

Linked assembly:

GCA_017976315.1 (alternate pseudohaplotype of diploid)

IDs: 9844511 [UID] 26270298 [GenBank] 27070618 [RefSeq]

See Genome Information for Chelmon rostratus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_017976325.1	≠	GCF_017976325.1	fCheRos1.pri	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	644,208,431
Total ungapped length	644,197,051
Gaps between scaffolds	0
Number of scaffolds	29
Scaffold N50	27,778,429
Scaffold L50	11
Number of contigs	89
Contig N50	16,959,746
Contig L50	15
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	29

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM030613.1	=	NC_055658.1	0
Chromosome 2	CM030614.1	=	NC_055659.1	0
Chromosome 3	CM030615.1	=	NC_055660.1	0
Chromosome 4	CM030616.1	=	NC_055661.1	0
Chromosome 5	CM030617.1	=	NC_055662.1	0
Chromosome 6	CM030618.1	=	NC_055663.1	0
Chromosome 7	CM030619.1	=	NC_055664.1	0
Chromosome 8	CM030620.1	=	NC_055665.1	0
Chromosome 9	CM030621.1	=	NC_055666.1	0
Chromosome 10	CM030622.1	=	NC_055667.1	0
Chromosome 11	CM030623.1	=	NC_055668.1	0
Chromosome 12	CM030624.1	=	NC_055669.1	0
Chromosome 13	CM030625.1	=	NC_055670.1	0
Chromosome 14	CM030626.1	=	NC_055671.1	0
Chromosome 15	CM030627.1	=	NC_055672.1	0
Chromosome 16	CM030628.1	=	NC_055673.1	0
Chromosome 17	CM030629.1	=	NC_055674.1	0
Chromosome 18	CM030630.1	=	NC_055675.1	0
Chromosome 19	CM030631.1	=	NC_055676.1	0
Chromosome 20	CM030632.1	=	NC_055677.1	0
Chromosome 21	CM030633.1	=	NC_055678.1	0
Chromosome 22	CM030634.1	=	NC_055679.1	0
Chromosome 23	CM030635.1	=	NC_055680.1	0
Chromosome 24	CM030636.1	=	NC_055681.1	0
unplaced	n/a	n/a	n/a	4

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	644,191,893	28	644,180,513	27,778,429	60
Chromosome 1	33,767,321	1	33,766,521	33,767,321	4
Chromosome 2	31,732,814	1	31,732,514	31,732,814	2
Chromosome 3	31,275,664	1	31,275,064	31,275,664	3
Chromosome 4	30,784,313	1	30,783,213	30,784,313	5
Chromosome 5	30,506,825	1	30,506,525	30,506,825	3
Chromosome 6	30,166,541	1	30,166,341	30,166,541	2
Chromosome 7	29,429,142	1	29,426,542	29,429,142	9
Chromosome 8	29,397,318	1	29,397,002	29,397,318	3
Chromosome 9	29,371,382	1	29,371,182	29,371,382	1
Chromosome 10	29,002,362	1	29,002,362	29,002,362	0
Chromosome 11	27,778,429	1	27,777,829	27,778,429	2
Chromosome 12	27,761,344	1	27,760,744	27,761,344	3
Chromosome 13	27,561,893	1	27,561,793	27,561,893	1
Chromosome 14	26,705,439	1	26,705,339	26,705,439	1
Chromosome 15	26,528,000	1	26,527,800	26,528,000	2
Chromosome 16	25,560,421	1	25,560,221	25,560,421	1
Chromosome 17	25,009,573	1	25,008,373	25,009,573	5
Chromosome 18	24,978,683	1	24,978,219	24,978,683	3
Chromosome 19	24,284,375	1	24,283,775	24,284,375	2
Chromosome 20	23,216,718	1	23,216,418	23,216,718	2
Chromosome 21	23,181,324	1	23,181,124	23,181,324	2
Chromosome 22	20,951,471	1	20,951,371	20,951,471	1
Chromosome 23	19,911,298	1	19,911,098	19,911,298	2
Chromosome 24	15,180,958	1	15,180,858	15,180,958	1
unplaced	148,285	4	148,285	29,805	0

Assembly

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fCheRos1.pri

See Genome Information for Chelmon rostratus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear