fToxJac2.pri

Organism name:: Toxotes jaculatrix (banded archerfish)
Isolate:: fToxJac2
BioSample:: SAMN18445299
BioProject:: PRJNA717046
Submitter:: Vertebrate Genomes Project
Date:: 2021/04/15
Assembly type:: haploid (principal pseudohaplotype of diploid)
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_017976425.1 (latest)
RefSeq assembly accession:: GCF_017976425.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAGIYR01
Assembly method:: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Assembly Polish v. SMRTLink7.0.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-05; VGP assembly pipeline v. 1.6
Expected final version:: no
Genome coverage:: 60.0x
Sequencing technology:: PacBio Sequel; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

IDs: 9844821 [UID] 26270388 [GenBank] 26407908 [RefSeq]

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_017976425.1	=	GCF_017976425.1	fToxJac2.pri	Chromosome	Latest GenBank, Latest RefSeq

Total sequence length	621,503,431
Total ungapped length	620,365,959
Gaps between scaffolds	0
Number of scaffolds	96
Scaffold N50	26,859,436
Scaffold L50	11
Number of contigs	194
Contig N50	15,555,772
Contig L50	16
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	96

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM030680.1	=	NC_054394.1	0
Chromosome 2	CM030681.1	=	NC_054395.1	0
Chromosome 3	CM030682.1	=	NC_054396.1	0
Chromosome 4	CM030683.1	=	NC_054397.1	0
Chromosome 5	CM030684.1	=	NC_054398.1	0
Chromosome 6	CM030685.1	=	NC_054399.1	0
Chromosome 7	CM030686.1	=	NC_054400.1	0
Chromosome 8	CM030687.1	=	NC_054401.1	0
Chromosome 9	CM030688.1	=	NC_054402.1	0
Chromosome 10	CM030689.1	=	NC_054403.1	0
Chromosome 11	CM030690.1	=	NC_054404.1	0
Chromosome 12	CM030691.1	=	NC_054405.1	0
Chromosome 13	CM030692.1	=	NC_054406.1	0
Chromosome 14	CM030693.1	=	NC_054407.1	0
Chromosome 15	CM030694.1	=	NC_054408.1	0
Chromosome 16	CM030695.1	=	NC_054409.1	0
Chromosome 17	CM030696.1	=	NC_054410.1	0
Chromosome 18	CM030697.1	=	NC_054411.1	0
Chromosome 19	CM030698.1	=	NC_054412.1	0
Chromosome 20	CM030699.1	=	NC_054413.1	0
Chromosome 21	CM030700.1	=	NC_054414.1	0
Chromosome 22	CM030701.1	=	NC_054415.1	0
Chromosome 23	CM030702.1	=	NC_054416.1	0
Chromosome 24	CM030703.1	=	NC_054417.1	0
unplaced	n/a	n/a	n/a	72

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	621,503,431	96	620,365,959	26,859,436	98
Chromosome 1	32,862,146	1	32,861,446	32,862,146	2
Chromosome 2	31,067,618	1	31,065,469	31,067,618	9
Chromosome 3	30,992,779	1	30,904,995	30,992,779	5
Chromosome 4	30,857,583	1	30,832,136	30,857,583	3
Chromosome 5	30,579,152	1	30,578,239	30,579,152	4
Chromosome 6	30,449,169	1	30,447,123	30,449,169	3
Chromosome 7	29,950,362	1	29,947,253	29,950,362	9
Chromosome 8	29,772,078	1	29,771,478	29,772,078	3
Chromosome 9	29,625,875	1	29,624,740	29,625,875	5
Chromosome 10	28,774,280	1	28,768,203	28,774,280	2
Chromosome 11	26,859,436	1	26,858,736	26,859,436	2
Chromosome 12	26,782,438	1	26,756,650	26,782,438	9
Chromosome 13	26,730,524	1	26,728,645	26,730,524	7
Chromosome 14	26,269,235	1	26,269,222	26,269,235	1
Chromosome 15	26,017,954	1	26,015,630	26,017,954	2
Chromosome 16	25,570,266	1	25,569,866	25,570,266	2
Chromosome 17	23,680,149	1	23,677,819	23,680,149	4
Chromosome 18	22,361,531	1	22,346,353	22,361,531	6
Chromosome 19	21,569,381	1	21,410,129	21,569,381	2
Chromosome 20	21,218,196	1	21,217,196	21,218,196	4
Chromosome 21	20,835,952	1	20,829,681	20,835,952	3
Chromosome 22	17,231,459	1	17,221,359	17,231,459	1
Chromosome 23	15,399,638	1	14,619,973	15,399,638	7
Chromosome 24	11,761,534	1	11,758,922	11,761,534	3
unplaced	4,284,696	72	4,284,696	61,727	0