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ASM1806980v1

Organism name:
Pseudoalteromonas ostreae (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: hOe-66
BioSample:
SAMN18537376
BioProject:
PRJNA718511
Submitter:
Universite de Bretagne Occidentale
Date:
2021/04/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_018069805.1 (latest)
RefSeq assembly accession:
GCF_018069805.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAGPYN01
Assembly method:
Unicycler v. 0.4.8
Expected final version:
yes
Genome coverage:
124.0x
Sequencing technology:
Illumina MiSeq

IDs: 9893921 [UID] 26375328 [GenBank] 26409408 [RefSeq]

See Genome Information for Pseudoalteromonas ostreae

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

The organism and strain were updated to Pseudoalteromonas sp. hOe-66 in June 2021 to agree with the 16S rRNA gene of this organism, GenBank record MT271987.1

Global statistics

Total sequence length4,643,030
Total ungapped length4,643,030
Number of contigs101
Contig N50181,424
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)101

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,643,0301014,643,030181,42400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudoalteromonas ostreaePseudoalteromonas ostreae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_902498845.1Pseudoalteromonas rhizosphaeraetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.7078.0168.76

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected