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ASM1821981v1

Organism name:
Thalassovita aquimarina (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: KMM:8518
Infraspecific name:
Strain: KMM 8518
BioSample:
SAMN16706910
BioProject:
PRJNA675401
Submitter:
G.B. Elyakov Pacific Institute of Bioorganic Chemistry
Date:
2021/04/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_018219815.1 (latest)
RefSeq assembly accession:
GCF_018219815.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JADMKU01
Assembly method:
SPAdes v. 3.11.1
Expected final version:
yes
Genome coverage:
21.0x
Sequencing technology:
Illumina MiSeq

IDs: 9972501 [UID] 26551568 [GenBank] 26713858 [RefSeq]

See Genome Information for Thalassovita aquimarina

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from KMM:8518

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/10/2020 21:32:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,228
CDSs (total)::4,178
Genes (coding)::4,118
CDSs (with protein)::4,118
Genes (RNA)::50
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::44
ncRNAs::3
Pseudo Genes (total)::60
CDSs (without protein)::60
Pseudo Genes (ambiguous residues)::0 of 60
Pseudo Genes (frameshifted)::23 of 60
Pseudo Genes (incomplete)::28 of 60
Pseudo Genes (internal stop)::18 of 60
Pseudo Genes (multiple problems)::9 of 60
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,333,180
Total ungapped length4,333,180
Number of contigs67
Contig N50164,809
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)67

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,333,180674,333,180164,80900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thalassovita aquimarinaThalassovita aquimarina

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009857745.1Thalassovita mangrovitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.1569.8472.80

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected