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Source database (GenBank or RefSeq) File type

ASM1834038v1

Organism name:

Cyprinus carpio (common carp)

Isolate:

SPL01

BioSample:

SAMN17005855

BioProject:

PRJNA682709

Submitter:

Chinese Academy of Fishery Sciences

Date:

2021/05/12

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_018340385.1 (latest)

RefSeq assembly accession:

GCF_018340385.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 7 unlocalized scaffolds on chromosome MT
Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAEOAB01

Assembly method:

wtdbg v. 2; quickmerge v. 1

Expected final version:

yes

Genome coverage:

184.8x

Sequencing technology:

PacBio; Oxford Nanopore; Illumina HiSeq

IDs: 10036561 [UID] 26691908 [GenBank] 27957658 [RefSeq]

See Genome Information for Cyprinus carpio

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_018340385.1	≠	GCF_018340385.1	ASM1834038v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,680,134,903
Total ungapped length	1,672,162,994
Gaps between scaffolds	0
Number of scaffolds	6,701
Scaffold N50	29,545,497
Scaffold L50	24
Number of contigs	19,838
Contig N50	1,558,716
Contig L50	229
Total number of chromosomes and plasmids	51
Number of component sequences (WGS or clone)	6,701

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome A1	CM031245.1	=	NC_056572.1	0
Chromosome A2	CM031256.1	=	NC_056573.1	0
Chromosome A3	CM031263.1	=	NC_056574.1	0
Chromosome A4	CM031264.1	=	NC_056575.1	0
Chromosome A5	CM031265.1	=	NC_056576.1	0
Chromosome A6	CM031266.1	=	NC_056577.1	0
Chromosome A7	CM031267.1	=	NC_056578.1	0
Chromosome A8	CM031268.1	=	NC_056579.1	0
Chromosome A9	CM031269.1	=	NC_056580.1	0
Chromosome A10	CM031246.1	=	NC_056581.1	0
Chromosome A11	CM031247.1	=	NC_056582.1	0
Chromosome A12	CM031248.1	=	NC_056583.1	0
Chromosome A13	CM031249.1	=	NC_056584.1	0
Chromosome A14	CM031250.1	=	NC_056585.1	0
Chromosome A15	CM031251.1	=	NC_056586.1	0
Chromosome A16	CM031252.1	=	NC_056587.1	0
Chromosome A17	CM031253.1	=	NC_056588.1	0
Chromosome A18	CM031254.1	=	NC_056589.1	0
Chromosome A19	CM031255.1	=	NC_056590.1	0
Chromosome A20	CM031257.1	=	NC_056591.1	0
Chromosome A21	CM031258.1	=	NC_056592.1	0
Chromosome A22	CM031259.1	=	NC_056593.1	0
Chromosome A23	CM031260.1	=	NC_056594.1	0
Chromosome A24	CM031261.1	=	NC_056595.1	0
Chromosome A25	CM031262.1	=	NC_056596.1	0
Chromosome B1	CM031270.1	=	NC_056597.1	0
Chromosome B2	CM031281.1	=	NC_056598.1	0
Chromosome B3	CM031288.1	=	NC_056599.1	0
Chromosome B4	CM031289.1	=	NC_056600.1	0
Chromosome B5	CM031290.1	=	NC_056601.1	0
Chromosome B6	CM031291.1	=	NC_056602.1	0
Chromosome B7	CM031292.1	=	NC_056603.1	0
Chromosome B8	CM031293.1	=	NC_056604.1	0
Chromosome B9	CM031294.1	=	NC_056605.1	0
Chromosome B10	CM031271.1	=	NC_056606.1	0
Chromosome B11	CM031272.1	=	NC_056607.1	0
Chromosome B12	CM031273.1	=	NC_056608.1	0
Chromosome B13	CM031274.1	=	NC_056609.1	0
Chromosome B14	CM031275.1	=	NC_056610.1	0
Chromosome B15	CM031276.1	=	NC_056611.1	0
Chromosome B16	CM031277.1	=	NC_056612.1	0
Chromosome B17	CM031278.1	=	NC_056613.1	0
Chromosome B18	CM031279.1	=	NC_056614.1	0
Chromosome B19	CM031280.1	=	NC_056615.1	0
Chromosome B20	CM031282.1	=	NC_056616.1	0
Chromosome B21	CM031283.1	=	NC_056617.1	0
Chromosome B22	CM031284.1	=	NC_056618.1	0
Chromosome B23	CM031285.1	=	NC_056619.1	0
Chromosome B24	CM031286.1	=	NC_056620.1	0
Chromosome B25	CM031287.1	=	NC_056621.1	0
unplaced	n/a	n/a	n/a	6,650

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,680,118,328	6,700	1,672,146,419	29,545,497	13,137
Chromosome A1	39,504,823	1	39,251,518	39,504,823	432
Chromosome A2	28,433,155	1	28,374,665	28,433,155	66
Chromosome A3	39,349,182	1	39,139,973	39,349,182	339
Chromosome A4	36,279,972	1	35,759,164	36,279,972	781
Chromosome A5	39,981,485	1	39,873,106	39,981,485	161
Chromosome A6	34,149,625	1	34,067,791	34,149,625	105
Chromosome A7	47,223,169	1	46,830,095	47,223,169	638
Chromosome A8	27,612,319	1	27,542,645	27,612,319	99
Chromosome A9	32,520,448	1	32,441,213	32,520,448	117
Chromosome A10	20,928,587	1	20,889,311	20,928,587	52
Chromosome A11	26,868,042	1	26,740,407	26,868,042	187
Chromosome A12	27,140,183	1	27,083,905	27,140,183	82
Chromosome A13	30,664,011	1	30,592,216	30,664,011	115
Chromosome A14	30,475,081	1	30,338,347	30,475,081	184
Chromosome A15	29,545,497	1	29,368,883	29,545,497	267
Chromosome A16	23,572,709	1	23,507,427	23,572,709	109
Chromosome A17	28,879,634	1	28,834,707	28,879,634	53
Chromosome A18	30,158,143	1	30,094,424	30,158,143	86
Chromosome A19	24,372,310	1	24,321,250	24,372,310	66
Chromosome A20	27,589,077	1	27,538,833	27,589,077	73
Chromosome A21	25,358,796	1	25,292,792	25,358,796	115
Chromosome A22	22,237,253	1	22,137,275	22,237,253	163
Chromosome A23	25,516,351	1	25,457,605	25,516,351	81
Chromosome A24	25,855,823	1	25,773,179	25,855,823	77
Chromosome A25	21,510,850	1	21,409,549	21,510,850	151
Chromosome B1	40,474,758	1	40,358,440	40,474,758	190
Chromosome B2	32,409,921	1	32,342,388	32,409,921	99
Chromosome B3	48,440,497	1	48,106,089	48,440,497	495
Chromosome B4	37,472,334	1	37,193,895	37,472,334	463
Chromosome B5	38,117,132	1	38,045,318	38,117,132	102
Chromosome B6	30,208,039	1	30,157,133	30,208,039	73
Chromosome B7	47,159,336	1	47,082,874	47,159,336	137
Chromosome B8	29,221,401	1	29,115,832	29,221,401	124
Chromosome B9	34,063,200	1	33,944,730	34,063,200	214
Chromosome B10	24,790,803	1	24,687,913	24,790,803	132
Chromosome B11	24,701,381	1	24,674,224	24,701,381	41
Chromosome B12	26,437,327	1	26,357,076	26,437,327	116
Chromosome B13	31,841,649	1	31,767,279	31,841,649	122
Chromosome B14	27,457,767	1	27,375,337	27,457,767	141
Chromosome B15	29,072,104	1	28,991,014	29,072,104	104
Chromosome B16	30,612,910	1	30,564,050	30,612,910	76
Chromosome B17	28,741,886	1	28,685,173	28,741,886	86
Chromosome B18	27,906,327	1	27,868,832	27,906,327	62
Chromosome B19	32,052,705	1	31,924,101	32,052,705	158
Chromosome B20	30,677,930	1	30,603,129	30,677,930	88
Chromosome B21	20,763,676	1	20,685,727	20,763,676	130
Chromosome B22	36,154,487	1	35,461,587	36,154,487	1,116
Chromosome B23	27,667,832	1	27,564,725	27,667,832	140
Chromosome B24	24,375,737	1	24,314,339	24,375,737	91
Chromosome B25	24,466,304	1	24,358,634	24,466,304	164
unplaced	149,104,360	6,650	147,256,300	596,152	3,874

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ASM1834038v1

See Genome Information for Cyprinus carpio

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear