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Source database (GenBank or RefSeq) File type

O.geoffroyi_Oge1_pat1.0

Organism name:

Leopardus geoffroyi (Geoffroy's cat)

Isolate:

Oge1

Sex:

male

BioSample:

SAMN19729386

BioProject:

PRJNA684599

Submitter:

Texas A&M University

Date:

2021/05/13

Assembly type:

alternate-pseudohaplotype

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_018350155.1 (latest)

RefSeq assembly accession:

GCF_018350155.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAFEKB01

Assembly method:

NextDenovo v. 2.2-beta.0

Expected final version:

yes

Reference guided assembly:

GCA_016509815.1

Genome coverage:

85.0x

Sequencing technology:

PacBio Sequel 2

Linked assembly:

GCF_018350175.1 (principal pseudohaplotype of diploid)

IDs: 10039151 [UID] 26707938 [GenBank] 30460958 [RefSeq]

See Genome Information for Leopardus geoffroyi

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_018350155.1	≠	GCF_018350155.1	O.geoffroyi_Oge1_pat1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

This is the paternal pseudohaplotype assembly created from the genome sequence of the F1 female progeny (isolate GxD-2; BioSample SAMN17062193) of a cross between a female Felis catus (isolate Fca126; BioSample SAMN19729387) and male Leopardus geoffroyi (isolate Oge1; BioSample SAMN19729386).

Global statistics

Total sequence length	2,426,387,554
Total ungapped length	2,426,379,054
Gaps between scaffolds	0
Number of scaffolds	47
Scaffold N50	152,606,360
Scaffold L50	7
Number of contigs	92
Contig N50	104,474,415
Contig L50	9
Total number of chromosomes and plasmids	19
Number of component sequences (WGS or clone)	82

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome A1	CM031394.1	=	NC_059326.1	0
Chromosome B1	CM031397.1	=	NC_059327.1	0
Chromosome C1	CM031401.1	=	NC_059328.1	0
Chromosome D1	CM031404.1	=	NC_059329.1	1
Chromosome E1	CM031408.1	=	NC_059330.1	0
Chromosome A2	CM031395.1	=	NC_059331.1	1
Chromosome B2	CM031398.1	=	NC_059332.1	1
Chromosome C2	CM031402.1	=	NC_059333.1	1
Chromosome D2	CM031405.1	=	NC_059334.1	1
Chromosome E2	CM031409.1	=	NC_059335.1	0
Chromosome A3	CM031396.1	=	NC_059336.1	0
Chromosome B3	CM031399.1	=	NC_059337.1	0
Chromosome C3	CM031403.1	=	NC_059338.1	1
Chromosome D3	CM031406.1	=	NC_059339.1	13
Chromosome E3	CM031410.1	=	NC_059340.1	1
Chromosome B4	CM031400.1	=	NC_059341.1	0
Chromosome D4	CM031407.1	=	NC_059342.1	0
Chromosome X	CM031393.1	=	NC_059343.1	7
unplaced	n/a	n/a	n/a	1

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	2,426,370,816	46	2,426,362,316	152,606,360	45	0
Chromosome A1	Assembled molecule	239,694,388	1	239,694,288	239,694,388	1	0
Chromosome B1	Assembled molecule	205,836,458	1	205,836,358	205,836,458	1	0
Chromosome C1	Assembled molecule	222,052,948	1	222,052,648	222,052,948	3	0
Chromosome D1	AllAssembled moleculeUnlocalized scaffolds	115,856,002115,783,43772,565	211	115,855,202115,782,63772,565	115,783,437115,783,43772,565	440	000
Chromosome E1	Assembled molecule	61,591,894	1	61,591,394	61,591,894	1	0
Chromosome A2	AllAssembled moleculeUnlocalized scaffolds	169,767,591169,709,48158,110	211	169,766,191169,708,08158,110	169,709,481169,709,48158,110	660	000
Chromosome B2	AllAssembled moleculeUnlocalized scaffolds	152,723,871152,606,360117,511	211	152,723,371152,605,860117,511	152,606,360152,606,360117,511	110	000
Chromosome C2	AllAssembled moleculeUnlocalized scaffolds	159,295,082158,996,348298,734	211	159,295,082158,996,348298,734	158,996,348158,996,348298,734	000	000
Chromosome D2	AllAssembled moleculeUnlocalized scaffolds	88,619,32088,472,993146,327	211	88,618,82088,472,493146,327	88,472,99388,472,993146,327	550	000
Chromosome E2	Assembled molecule	62,031,975	1	62,031,975	62,031,975	0	0
Chromosome A3	Assembled molecule	140,630,183	1	140,630,083	140,630,183	1	0
Chromosome B3	Assembled molecule	148,130,213	1	148,130,213	148,130,213	0	0
Chromosome C3	AllAssembled moleculeUnlocalized scaffolds	154,024,117153,706,148317,969	211	154,023,617153,705,648317,969	153,706,148153,706,148317,969	110	000
Chromosome D3	AllAssembled moleculeUnlocalized scaffolds	96,932,21894,884,3512,047,867	14113	96,931,31894,883,4512,047,867	94,884,35194,884,351180,892	550	000
Chromosome E3	AllAssembled moleculeUnlocalized scaffolds	42,221,64542,047,855173,790	211	42,221,34542,047,555173,790	42,047,85542,047,855173,790	330	000
Chromosome B4	Assembled molecule	142,838,203	1	142,837,503	142,838,203	3	0
Chromosome D4	Assembled molecule	94,461,142	1	94,461,142	94,461,142	0	0
Chromosome X	AllAssembled moleculeUnlocalized scaffolds	129,634,856128,930,408704,448	817	129,633,056128,928,608704,448	128,930,408128,930,408112,120	10100	000
unplaced	Assembled molecule	28,710	1	28,710	28,710	0	0

Assembly

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O.geoffroyi_Oge1_pat1.0

See Genome Information for Leopardus geoffroyi

Pathogen Detection Resources

History (Show revision history)

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Assembly Unit Name
Primary Assembly
non-nuclear