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Source database (GenBank or RefSeq) File type

ASM1883169v1

Organism name:

Puntigrus tetrazona (Sumatra barb)

Isolate:

hp1

BioSample:

SAMN17036344

BioProject:

PRJNA683758

Submitter:

China Academy of Fishery Sciencey

Date:

2021/06/10

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_018831695.1 (latest)

RefSeq assembly accession:

GCF_018831695.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 1 unlocalized scaffold on chromosome MT
Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAEQBD01

Assembly method:

wtdbg v. 2; quickmerge v. 1

Expected final version:

yes

Genome coverage:

150.0x

Sequencing technology:

Illumina HiSeq; Nanopore

IDs: 10283311 [UID] 27332748 [GenBank] 28273288 [RefSeq]

See Genome Information for Puntigrus tetrazona

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_018831695.1	≠	GCF_018831695.1	ASM1883169v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	730,818,536
Total ungapped length	730,426,884
Gaps between scaffolds	0
Number of scaffolds	1,122
Scaffold N50	25,085,836
Scaffold L50	13
Number of contigs	4,785
Contig N50	1,423,374
Contig L50	131
Total number of chromosomes and plasmids	26
Number of component sequences (WGS or clone)	1,122

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM032068.1	=	NC_056699.1	0
Chromosome 2	CM032069.1	=	NC_056700.1	0
Chromosome 3	CM032070.1	=	NC_056701.1	0
Chromosome 4	CM032071.1	=	NC_056702.1	0
Chromosome 5	CM032072.1	=	NC_056703.1	0
Chromosome 6	CM032073.1	=	NC_056704.1	0
Chromosome 7	CM032074.1	=	NC_056705.1	0
Chromosome 8	CM032075.1	=	NC_056706.1	0
Chromosome 9	CM032076.1	=	NC_056707.1	0
Chromosome 10	CM032077.1	=	NC_056708.1	0
Chromosome 11	CM032078.1	=	NC_056709.1	0
Chromosome 12	CM032079.1	=	NC_056710.1	0
Chromosome 13	CM032080.1	=	NC_056711.1	0
Chromosome 14	CM032081.1	=	NC_056712.1	0
Chromosome 15	CM032082.1	=	NC_056713.1	0
Chromosome 16	CM032083.1	=	NC_056714.1	0
Chromosome 17	CM032084.1	=	NC_056715.1	0
Chromosome 18	CM032085.1	=	NC_056716.1	0
Chromosome 19	CM032086.1	=	NC_056717.1	0
Chromosome 20	CM032087.1	=	NC_056718.1	0
Chromosome 21	CM032088.1	=	NC_056719.1	0
Chromosome 22	CM032089.1	=	NC_056720.1	0
Chromosome 23	CM032090.1	=	NC_056721.1	0
Chromosome 24	CM032091.1	=	NC_056722.1	0
Chromosome 25	CM032092.1	=	NC_056723.1	0
unplaced	n/a	n/a	n/a	1,096

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	730,801,986	1,121	730,410,334	25,085,836	3,663
Chromosome 1	31,761,587	1	31,735,826	31,761,587	230
Chromosome 2	25,613,461	1	25,598,162	25,613,461	131
Chromosome 3	30,200,998	1	30,181,062	30,200,998	201
Chromosome 4	29,200,999	1	29,175,069	29,200,999	241
Chromosome 5	32,833,783	1	32,819,078	32,833,783	138
Chromosome 6	27,473,687	1	27,453,433	27,473,687	190
Chromosome 7	41,700,998	1	41,681,390	41,700,998	206
Chromosome 8	24,299,999	1	24,289,393	24,299,999	114
Chromosome 9	26,426,558	1	26,410,992	26,426,558	155
Chromosome 10	16,503,406	1	16,493,255	16,503,406	74
Chromosome 11	24,513,629	1	24,500,560	24,513,629	130
Chromosome 12	20,499,150	1	20,480,993	20,499,150	152
Chromosome 13	25,085,836	1	25,069,930	25,085,836	130
Chromosome 14	26,701,998	1	26,682,795	26,701,998	203
Chromosome 15	23,709,629	1	23,696,257	23,709,629	122
Chromosome 16	28,146,790	1	28,133,845	28,146,790	113
Chromosome 17	22,256,391	1	22,248,426	22,256,391	82
Chromosome 18	26,409,628	1	26,395,494	26,409,628	139
Chromosome 19	20,532,727	1	20,521,596	20,532,727	107
Chromosome 20	27,616,869	1	27,602,811	27,616,869	145
Chromosome 21	19,199,999	1	19,192,894	19,199,999	74
Chromosome 22	18,002,998	1	17,991,675	18,002,998	88
Chromosome 23	19,062,720	1	19,048,080	19,062,720	123
Chromosome 24	21,790,128	1	21,779,790	21,790,128	98
Chromosome 25	17,260,642	1	17,252,697	17,260,642	64
unplaced	103,997,376	1,096	103,974,831	782,096	213

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ASM1883169v1

See Genome Information for Puntigrus tetrazona

Pathogen Detection Resources

History (Show revision history)

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Assembly Unit Name
Primary Assembly
non-nuclear