SceUnd_v1.1

Organism name:: Sceloporus undulatus (fence lizard)
Infraspecific name:: Ecotype: Alabama
Isolate:: JIND9_A2432
Sex:: male
BioSample:: SAMN14373011
BioProject:: PRJNA612440
Submitter:: Auburn University
Date:: 2021/07/08
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_019175285.1 (latest)
RefSeq assembly accession:: GCF_019175285.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAGXEY01
Assembly method:: SuperNova v. 2016; HiRise v. August 2017; PBJelly v. September 2017
Expected final version:: yes
Genome coverage:: 4859.0x
Sequencing technology:: Illumina HiSeq; PacBio

IDs: 10475601 [UID] 27805748 [GenBank] 27908168 [RefSeq]

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_019175285.1	=	GCF_019175285.1	SceUnd_v1.1	Chromosome	Latest GenBank, Latest RefSeq

Total sequence length	1,905,484,175
Total ungapped length	1,858,345,178
Gaps between scaffolds	0
Number of scaffolds	45,012
Scaffold N50	275,632,209
Scaffold L50	3
Number of contigs	93,150
Contig N50	75,501
Contig L50	7,321
Total number of chromosomes and plasmids	11
Number of component sequences (WGS or clone)	45,012

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM032819.1	=	NC_056522.1	0
Chromosome 2	CM032820.1	=	NC_056523.1	0
Chromosome 3	CM032821.1	=	NC_056524.1	0
Chromosome 4	CM032822.1	=	NC_056525.1	0
Chromosome 5	CM032823.1	=	NC_056526.1	0
Chromosome 6	CM032824.1	=	NC_056527.1	0
Chromosome 7	CM032825.1	=	NC_056528.1	0
Chromosome 8	CM032826.1	=	NC_056529.1	0
Chromosome 9	CM032827.1	=	NC_056530.1	0
Chromosome 10	CM032828.1	=	NC_056531.1	0
Chromosome 11	CM032829.1	=	NC_056532.1	0
unplaced	n/a	n/a	n/a	45,001

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,905,484,175	45,012	1,858,345,178	275,632,209	48,138
Chromosome 1	382,616,321	1	372,799,277	382,616,321	9,024
Chromosome 2	334,326,159	1	324,887,487	334,326,159	8,188
Chromosome 3	275,632,209	1	268,086,405	275,632,209	6,354
Chromosome 4	251,488,870	1	245,213,138	251,488,870	5,691
Chromosome 5	193,594,431	1	189,771,519	193,594,431	3,957
Chromosome 6	170,077,623	1	166,110,672	170,077,623	3,738
Chromosome 7	51,754,372	1	50,729,186	51,754,372	1,172
Chromosome 8	39,619,125	1	38,911,206	39,619,125	904
Chromosome 9	37,050,061	1	35,989,745	37,050,061	1,046
Chromosome 10	16,858,644	1	16,138,615	16,858,644	521
Chromosome 11	12,783,370	1	12,125,404	12,783,370	570
unplaced	139,682,990	45,001	137,582,524	3,665	6,973