U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



USGS_Curo_1.0

Organism name:
Centrocercus urophasianus (Greater sage-grouse)
Isolate:
14NV4802_14NV808
Sex:
female
BioSample:
SAMN20124253
BioProject:
PRJNA734947
Submitter:
United States Geological Survey
Date:
2021/07/15
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_019232065.1 (latest)
RefSeq assembly accession:
GCF_019232065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAHKSY01
Assembly method:
10X Genomics supernova v. 2.1.1; BioNano Genomics BNG-NGS Merge v. 1.0
Expected final version:
yes
Reference guided assembly:
GCA_005890655.1
Genome coverage:
27.0x
Sequencing technology:
BioNano optical mapping; 10X Genomics

IDs: 10500801 [UID] 27875298 [GenBank] 28182808 [RefSeq]

See Genome Information for Centrocercus urophasianus

History (Show revision history)

Comment

Global statistics

Total sequence length1,010,657,860
Total ungapped length973,669,787
Gaps between scaffolds0
Number of scaffolds1,502
Scaffold N5034,618,776
Scaffold L509
Number of contigs11,396
Contig N50177,390
Contig L501,618
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,502

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,010,657,8601,502973,669,78734,618,7769,8940