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USGS_WTPT01

Organism name:
Lagopus leucura (white-tailed ptarmigan)
Isolate:
7727_CA_CO
Sex:
male
BioSample:
SAMN12859112
BioProject:
PRJNA574481
Submitter:
United States Geological Survey
Date:
2021/07/15
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_019238085.1 (latest)
RefSeq assembly accession:
GCF_019238085.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAHKMA01
Assembly method:
BioNano Genomics BNG-NGS Merge v. 1.0; 10X Genomics supernova v. 2.1.1
Expected final version:
yes
Genome coverage:
42.0x
Sequencing technology:
10X Genomics linked reads

IDs: 10510521 [UID] 27881008 [GenBank] 28190658 [RefSeq]

See Genome Information for Lagopus leucura

History (Show revision history)

Comment

Global statistics

Total sequence length1,016,020,572
Total ungapped length991,871,408
Gaps between scaffolds0
Number of scaffolds7,343
Scaffold N5036,287,040
Scaffold L508
Number of contigs17,844
Contig N50214,153
Contig L501,328
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)7,343

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,016,020,5727,343991,871,40836,287,04010,5010