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Source database (GenBank or RefSeq) File type

PAN1.0

Organism name:

Protopterus annectens (West African lungfish)

Isolate:

FY-2018-M

Sex:

male

BioSample:

SAMN17890435

BioProject:

PRJNA701604

Submitter:

Northwestern Polytechnical University

Date:

2021/07/20

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_019279795.1 (latest)

RefSeq assembly accession:

GCF_019279795.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAGYFI01

Assembly method:

wtdbg v. huge

Expected final version:

yes

Genome coverage:

50.0x

Sequencing technology:

Oxford Nanopore

IDs: 10537111 [UID] 27954368 [GenBank] 28751778 [RefSeq]

See Genome Information for Protopterus annectens

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_019279795.1	≠	GCF_019279795.1	PAN1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

All 17 chromosomes of this 01 version of the genome, PAN1.0, were assembled into single sequences. However, chromosomes 1-8 had to be split into two or three pieces because their lengths exceeded the technical limit of roughly 2.14 billion ... base pairs. All the pieces were treated as chromosomes, so the chromosome number in assembly PAN1.0 is 27.  more

Global statistics

Total sequence length	40,054,341,269
Total ungapped length	39,061,234,303
Gaps between scaffolds	0
Number of scaffolds	12,668
Scaffold N50	1,974,114,035
Scaffold L50	11
Number of contigs	74,228
Contig N50	1,603,140
Contig L50	6,864
Total number of chromosomes and plasmids	28
Number of component sequences (WGS or clone)	12,668

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1.part0	CM033073.1	=	NC_056725.1	0
Chromosome 1.part1	CM033074.1	=	NC_056726.1	0
Chromosome 1.part2	CM033075.1	=	NC_056727.1	0
Chromosome 2.part0	CM033076.1	=	NC_056728.1	0
Chromosome 2.part1	CM033077.1	=	NC_056729.1	0
Chromosome 2.part2	CM033078.1	=	NC_056730.1	0
Chromosome 3.part0	CM033079.1	=	NC_056731.1	0
Chromosome 3.part1	CM033080.1	=	NC_056732.1	0
Chromosome 4.part0	CM033081.1	=	NC_056733.1	0
Chromosome 4.part1	CM033082.1	=	NC_056734.1	0
Chromosome 5.part0	CM033083.1	=	NC_056735.1	0
Chromosome 5.part1	CM033084.1	=	NC_056736.1	0
Chromosome 6.part0	CM033085.1	=	NC_056737.1	0
Chromosome 6.part1	CM033086.1	=	NC_056738.1	0
Chromosome 7.part0	CM033087.1	=	NC_056739.1	0
Chromosome 7.part1	CM033088.1	=	NC_056740.1	0
Chromosome 8.part0	CM033089.1	=	NC_056741.1	0
Chromosome 8.part1	CM033090.1	=	NC_056742.1	0
Chromosome 9	CM033091.1	=	NC_056743.1	0
Chromosome 10	CM033092.1	=	NC_056744.1	0
Chromosome 11	CM033093.1	=	NC_056745.1	0
Chromosome 12	CM033094.1	=	NC_056746.1	0
Chromosome 13	CM033095.1	=	NC_056747.1	0
Chromosome 14	CM033096.1	=	NC_056748.1	0
Chromosome 15	CM033097.1	=	NC_056749.1	0
Chromosome 16	CM033098.1	=	NC_056750.1	0
Chromosome 17	CM033099.1	=	NC_056751.1	0
unplaced	n/a	n/a	n/a	12,640

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	40,054,324,612	12,667	39,061,217,646	1,974,114,035	61,560
Chromosome 1.part0	2,000,000,000	1	1,956,520,579	2,000,000,000	2,829
Chromosome 1.part1	2,000,000,000	1	1,946,379,307	2,000,000,000	3,561
Chromosome 1.part2	1,260,428,656	1	1,229,239,735	1,260,428,656	1,698
Chromosome 2.part0	2,000,000,000	1	1,953,371,537	2,000,000,000	2,771
Chromosome 2.part1	2,000,000,000	1	1,954,561,988	2,000,000,000	3,027
Chromosome 2.part2	1,156,288,062	1	1,121,784,994	1,156,288,062	1,551
Chromosome 3.part0	2,000,000,000	1	1,954,985,824	2,000,000,000	2,645
Chromosome 3.part1	1,916,691,190	1	1,863,676,732	1,916,691,190	3,382
Chromosome 4.part0	2,000,000,000	1	1,951,283,118	2,000,000,000	2,979
Chromosome 4.part1	1,017,585,886	1	991,598,426	1,017,585,886	1,378
Chromosome 5.part0	2,000,000,000	1	1,954,543,929	2,000,000,000	2,803
Chromosome 5.part1	813,524,174	1	794,409,824	813,524,174	1,161
Chromosome 6.part0	2,000,000,000	1	1,954,350,915	2,000,000,000	2,801
Chromosome 6.part1	579,622,220	1	564,534,717	579,622,220	879
Chromosome 7.part0	2,000,000,000	1	1,952,557,534	2,000,000,000	3,013
Chromosome 7.part1	544,252,262	1	530,743,287	544,252,262	785
Chromosome 8.part0	2,000,000,000	1	1,944,258,239	2,000,000,000	3,852
Chromosome 8.part1	549,370,250	1	536,981,129	549,370,250	685
Chromosome 9	1,974,114,035	1	1,920,410,924	1,974,114,035	3,663
Chromosome 10	1,842,211,721	1	1,791,355,372	1,842,211,721	3,495
Chromosome 11	1,569,859,801	1	1,535,641,844	1,569,859,801	2,202
Chromosome 12	1,577,849,408	1	1,541,966,729	1,577,849,408	2,194
Chromosome 13	1,371,727,335	1	1,332,230,026	1,371,727,335	2,292
Chromosome 14	1,172,590,850	1	1,146,638,170	1,172,590,850	1,446
Chromosome 15	863,342,500	1	839,546,228	863,342,500	1,564
Chromosome 16	882,488,833	1	853,814,234	882,488,833	1,589
Chromosome 17	836,063,838	1	817,518,714	836,063,838	1,315
unplaced	126,313,591	12,640	126,313,591	10,894	0

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PAN1.0

See Genome Information for Protopterus annectens

Pathogen Detection Resources

History (Show revision history)

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Assembly Unit Name
Primary Assembly
non-nuclear