Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM1957865v1

Organism name:

Ricinus communis (castor bean)

Infraspecific name:

Ecotype: wild-type

Isolate:

WT05

BioSample:

SAMN13269094

BioProject:

PRJNA589181

Submitter:

Wuhan Botanical Garden, University of Chinese Academy of Sciences

Date:

2021/08/12

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_019578655.1 (latest)

RefSeq assembly accession:

GCF_019578655.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 6 unlocalized scaffolds on chromosome MT

Data displayed for RefSeq version

WGS Project:

JAABNL01

Assembly method:

Canu v. 1.7; Smartdenovo v. Feb-2018

Expected final version:

Genome coverage:

170.0x

Sequencing technology:

Oxford Nanopore

IDs: 10685891 [UID] 28331248 [GenBank] 33268498 [RefSeq]

See Genome Information for Ricinus communis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_019578655.1	≠	GCF_019578655.1	ASM1957865v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	315,619,833
Total ungapped length	315,454,833
Gaps between scaffolds	0
Number of scaffolds	140
Scaffold N50	31,927,722
Scaffold L50	5
Number of contigs	470
Contig N50	7,311,548
Contig L50	14
Total number of chromosomes and plasmids	10
Number of component sequences (WGS or clone)	140

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM033701.1	=	NC_063256.1	0
Chromosome 2	CM033702.1	=	NC_063257.1	0
Chromosome 3	CM033703.1	=	NC_063258.1	0
Chromosome 4	CM033704.1	=	NC_063259.1	0
Chromosome 5	CM033705.1	=	NC_063260.1	0
Chromosome 6	CM033706.1	=	NC_063261.1	0
Chromosome 7	CM033707.1	=	NC_063262.1	0
Chromosome 8	CM033708.1	=	NC_063263.1	0
Chromosome 9	CM033709.1	=	NC_063264.1	0
Chromosome 10	CM033710.1	=	NC_063265.1	0
unplaced	n/a	n/a	n/a	130

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	315,619,833	140	315,454,833	31,927,722	330
Chromosome 1	36,693,184	1	36,665,684	36,693,184	55
Chromosome 2	34,698,449	1	34,667,949	34,698,449	61
Chromosome 3	33,302,965	1	33,263,965	33,302,965	78
Chromosome 4	32,566,337	1	32,543,337	32,566,337	46
Chromosome 5	31,927,722	1	31,925,722	31,927,722	4
Chromosome 6	29,779,195	1	29,772,695	29,779,195	13
Chromosome 7	29,279,767	1	29,270,267	29,279,767	19
Chromosome 8	28,815,829	1	28,812,829	28,815,829	6
Chromosome 9	28,210,331	1	28,190,831	28,210,331	39
Chromosome 10	26,623,538	1	26,620,038	26,623,538	7
unplaced	3,722,516	130	3,721,516	75,000	2

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

ASM1957865v1

See Genome Information for Ricinus communis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics