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Source database (GenBank or RefSeq) File type

UBuf_Myxa_2

Organism name:

Myxocyprinus asiaticus (Chinese sucker)

Infraspecific name:

Ecotype: Aquarium Trade

Isolate:

MX2

BioSample:

SAMN19774990

BioProject:

PRJNA739167

Submitter:

University at Buffalo

Date:

2022/10/26

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_019703515.2 (latest)

RefSeq assembly accession:

GCF_019703515.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAIGOD02

Assembly method:

flye v. 2.8-b1674; juicer v. 1.6; 3D-DNA v. 180419; Juicebox Assembly Tools v. 1.11.08; Purge Haplotigs v. 1.1.2; kraken2 v. 2.0.8

Expected final version:

yes

Genome coverage:

62.0x

Sequencing technology:

Oxford Nanopore GridION; Illumina

IDs: 14223341 [UID] 36958378 [GenBank] 36997708 [RefSeq]

See Genome Information for Myxocyprinus asiaticus

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_019703515.2	≠	GCF_019703515.2	UBuf_Myxa_2	Chromosome	Latest GenBank, Latest RefSeq
GCA_019703515.1	n/a	n/a	MX_HiC_50CHRs.fa	Chromosome	Replaced GenBank

Comment

Global statistics

Total sequence length	2,340,864,798
Total ungapped length	2,340,752,798
Gaps between scaffolds	0
Number of scaffolds	353
Scaffold N50	47,849,308
Scaffold L50	22
Number of contigs	577
Contig N50	35,119,607
Contig L50	26
Total number of chromosomes and plasmids	51
Number of component sequences (WGS or clone)	353

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM033842.2	=	NC_059344.1	0
Chromosome 2	CM033843.2	=	NC_059345.1	0
Chromosome 3	CM033844.2	=	NC_059346.1	0
Chromosome 4	CM033845.2	=	NC_059347.1	0
Chromosome 5	CM033846.2	=	NC_059348.1	0
Chromosome 6	CM033847.2	=	NC_059349.1	0
Chromosome 7	CM033848.2	=	NC_059350.1	0
Chromosome 8	CM033849.2	=	NC_059351.1	0
Chromosome 9	CM033850.2	=	NC_059352.1	0
Chromosome 10	CM033851.2	=	NC_059353.1	0
Chromosome 11	CM033852.2	=	NC_059354.1	0
Chromosome 12	CM033853.2	=	NC_059355.1	0
Chromosome 13	CM033854.2	=	NC_059356.1	0
Chromosome 14	CM033855.2	=	NC_059357.1	0
Chromosome 15	CM033856.2	=	NC_059358.1	0
Chromosome 16	CM033857.2	=	NC_059359.1	0
Chromosome 17	CM033858.2	=	NC_059360.1	0
Chromosome 18	CM033859.2	=	NC_059361.1	0
Chromosome 19	CM033860.2	=	NC_059362.1	0
Chromosome 20	CM033861.2	=	NC_059363.1	0
Chromosome 21	CM033862.2	=	NC_059364.1	0
Chromosome 22	CM033863.2	=	NC_059365.1	0
Chromosome 23	CM033864.2	=	NC_059366.1	0
Chromosome 24	CM033865.2	=	NC_059367.1	0
Chromosome 25	CM033866.2	=	NC_059368.1	0
Chromosome 26	CM033867.2	=	NC_059369.1	0
Chromosome 27	CM033868.2	=	NC_059370.1	0
Chromosome 28	CM033869.2	=	NC_059371.1	0
Chromosome 29	CM033870.2	=	NC_059372.1	0
Chromosome 30	CM033871.2	=	NC_059373.1	0
Chromosome 31	CM033872.2	=	NC_059374.1	0
Chromosome 32	CM033873.2	=	NC_059375.1	0
Chromosome 33	CM033874.2	=	NC_059376.1	0
Chromosome 34	CM033875.2	=	NC_059377.1	0
Chromosome 35	CM033876.2	=	NC_059378.1	0
Chromosome 36	CM033877.2	=	NC_059379.1	0
Chromosome 37	CM033878.2	=	NC_059380.1	0
Chromosome 38	CM033879.2	=	NC_059381.1	0
Chromosome 39	CM033880.2	=	NC_059382.1	0
Chromosome 40	CM033881.2	=	NC_059383.1	0
Chromosome 41	CM033882.2	=	NC_059384.1	0
Chromosome 42	CM033883.2	=	NC_059385.1	0
Chromosome 43	CM033884.2	=	NC_059386.1	0
Chromosome 44	CM033885.2	=	NC_059387.1	0
Chromosome 45	CM033886.2	=	NC_059388.1	0
Chromosome 46	CM033887.2	=	NC_059389.1	0
Chromosome 47	CM033888.2	=	NC_059390.1	0
Chromosome 48	CM033889.2	=	NC_059391.1	0
Chromosome 49	CM033890.2	=	NC_059392.1	0
Chromosome 50	CM033891.2	=	NC_059393.1	0
unplaced	n/a	n/a	n/a	302

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,340,848,162	352	2,340,736,162	47,849,308	224
Chromosome 1	69,199,620	1	69,188,620	69,199,620	22
Chromosome 2	68,267,787	1	68,266,787	68,267,787	2
Chromosome 3	67,184,869	1	67,184,869	67,184,869	0
Chromosome 4	62,879,869	1	62,879,869	62,879,869	0
Chromosome 5	56,914,943	1	56,910,943	56,914,943	8
Chromosome 6	56,278,292	1	56,275,292	56,278,292	6
Chromosome 7	55,734,206	1	55,733,706	55,734,206	1
Chromosome 8	55,425,572	1	55,425,072	55,425,572	1
Chromosome 9	53,214,412	1	53,211,412	53,214,412	6
Chromosome 10	52,635,430	1	52,635,430	52,635,430	0
Chromosome 11	52,192,052	1	52,192,052	52,192,052	0
Chromosome 12	51,865,518	1	51,863,018	51,865,518	5
Chromosome 13	51,358,772	1	51,349,272	51,358,772	19
Chromosome 14	50,596,725	1	50,593,725	50,596,725	6
Chromosome 15	50,576,075	1	50,573,575	50,576,075	5
Chromosome 16	50,385,648	1	50,381,148	50,385,648	9
Chromosome 17	49,961,500	1	49,961,000	49,961,500	1
Chromosome 18	48,470,982	1	48,470,982	48,470,982	0
Chromosome 19	48,421,058	1	48,418,558	48,421,058	5
Chromosome 20	48,286,930	1	48,285,430	48,286,930	3
Chromosome 21	47,969,982	1	47,968,982	47,969,982	2
Chromosome 22	47,849,308	1	47,847,808	47,849,308	3
Chromosome 23	47,606,000	1	47,606,000	47,606,000	0
Chromosome 24	47,323,325	1	47,314,825	47,323,325	17
Chromosome 25	47,232,000	1	47,229,000	47,232,000	6
Chromosome 26	47,145,552	1	47,145,552	47,145,552	0
Chromosome 27	46,332,826	1	46,330,826	46,332,826	4
Chromosome 28	46,101,675	1	46,100,675	46,101,675	2
Chromosome 29	45,768,465	1	45,765,465	45,768,465	6
Chromosome 30	45,295,500	1	45,289,000	45,295,500	13
Chromosome 31	45,075,482	1	45,069,982	45,075,482	11
Chromosome 32	44,973,254	1	44,971,254	44,973,254	4
Chromosome 33	44,517,325	1	44,514,825	44,517,325	5
Chromosome 34	44,227,500	1	44,224,000	44,227,500	7
Chromosome 35	43,613,482	1	43,612,982	43,613,482	1
Chromosome 36	43,146,206	1	43,145,706	43,146,206	1
Chromosome 37	43,120,000	1	43,120,000	43,120,000	0
Chromosome 38	42,193,500	1	42,190,000	42,193,500	7
Chromosome 39	41,737,236	1	41,737,236	41,737,236	0
Chromosome 40	40,885,300	1	40,884,300	40,885,300	2
Chromosome 41	39,287,500	1	39,285,000	39,287,500	5
Chromosome 42	38,410,338	1	38,410,338	38,410,338	0
Chromosome 43	38,023,304	1	38,022,804	38,023,304	1
Chromosome 44	36,671,500	1	36,670,000	36,671,500	3
Chromosome 45	33,055,264	1	33,050,764	33,055,264	9
Chromosome 46	32,284,000	1	32,284,000	32,284,000	0
Chromosome 47	31,181,700	1	31,181,700	31,181,700	0
Chromosome 48	30,788,807	1	30,787,807	30,788,807	2
Chromosome 49	26,813,344	1	26,810,844	26,813,344	5
Chromosome 50	26,577,319	1	26,573,319	26,577,319	8
unplaced	5,790,908	302	5,790,408	34,000	1

Assembly

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UBuf_Myxa_2

See Genome Information for Myxocyprinus asiaticus

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear