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NDDB_SH_1

Organism name:
Bubalus bubalis (water buffalo)
Infraspecific name:
Breed: Murrah
Isolate:
160015118507
Sex:
female
BioSample:
SAMN11104991
BioProject:
PRJNA525182
Submitter:
National Dairy Development Board, India
Date:
2021/09/10
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_019923935.1 (latest)
RefSeq assembly accession:
GCF_019923935.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Different: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
VDCB01
Assembly method:
Falcon+Scaff10X+BioNano v. 2019-02-25
Expected final version:
yes
Genome coverage:
572.0x
Sequencing technology:
PacBio Sequel; 10X and BioNano Optical Map
Linked assembly:
GCF_019923925.1 (alternate pseudohaplotype of diploid)

IDs: 10872471 [UID] 28791618 [GenBank] 30093448 [RefSeq]

See Genome Information for Bubalus bubalis

Pathogen Detection Resources

There are 8 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,622,460,639
Total ungapped length2,622,394,739
Total number of chromosomes and plasmids26

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_019923955.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CM034271.1=NC_059157.1
Chromosome 2CM034272.1=NC_059158.1
Chromosome 3CM034273.1=NC_059159.1
Chromosome 4CM034274.1=NC_059160.1
Chromosome 5CM034275.1=NC_059161.1
Chromosome 6CM034276.1=NC_059162.1
Chromosome 7CM034277.1=NC_059163.1
Chromosome 8CM034278.1=NC_059164.1
Chromosome 9CM034279.1=NC_059165.1
Chromosome 10CM034280.1=NC_059166.1
Chromosome 11CM034281.1=NC_059167.1
Chromosome 12CM034282.1=NC_059168.1
Chromosome 13CM034283.1=NC_059169.1
Chromosome 14CM034284.1=NC_059170.1
Chromosome 15CM034285.1=NC_059171.1
Chromosome 16CM034286.1=NC_059172.1
Chromosome 17CM034287.1=NC_059173.1
Chromosome 18CM034288.1=NC_059174.1
Chromosome 19CM034289.1=NC_059175.1
Chromosome 20CM034290.1=NC_059176.1
Chromosome 21CM034291.1=NC_059177.1
Chromosome 22CM034292.1=NC_059178.1
Chromosome 23CM034293.1=NC_059179.1
Chromosome 24CM034294.1=NC_059180.1
Chromosome XCM034295.1=NC_059181.1

Assembly statistics

MoleculeTotal
Length
All2,622,444,281
Chromosome 1202,348,575
Chromosome 2188,164,321
Chromosome 3174,872,328
Chromosome 4164,971,372
Chromosome 5132,500,020
Chromosome 6120,418,900
Chromosome 7116,997,125
Chromosome 8119,318,788
Chromosome 9110,262,714
Chromosome 10104,551,495
Chromosome 11102,416,932
Chromosome 12106,386,409
Chromosome 1389,364,132
Chromosome 1483,479,656
Chromosome 1581,832,314
Chromosome 1685,115,218
Chromosome 1772,603,365
Chromosome 1865,791,760
Chromosome 1971,582,194
Chromosome 2069,611,172
Chromosome 2160,624,307
Chromosome 2261,771,150
Chromosome 2352,095,120
Chromosome 2442,172,481
Chromosome X143,192,433
MoleculeTotal
Length
Mitochondrion MT16,358