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Source database (GenBank or RefSeq) File type

HZGC01

Organism name:

Ctenopharyngodon idella (grass carp)

Isolate:

HZGC_01

Sex:

female

BioSample:

SAMN20170273

BioProject:

PRJNA745929

Submitter:

HuaZhong Agricultural University

Date:

2021/09/14

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_019924925.1 (latest)

RefSeq assembly accession:

GCF_019924925.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAIKLG01

Assembly method:

FALCON v. 1.4.2

Expected final version:

yes

Genome coverage:

175.0x

Sequencing technology:

PacBio Sequel

IDs: 10893211 [UID] 28835018 [GenBank] 36889528 [RefSeq]

See Genome Information for Ctenopharyngodon idella

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_019924925.1	≠	GCF_019924925.1	HZGC01	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	893,215,104
Total ungapped length	893,065,104
Gaps between scaffolds	0
Number of scaffolds	31
Scaffold N50	35,662,356
Scaffold L50	11
Number of contigs	181
Contig N50	19,319,444
Contig L50	17
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	31

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM034325.1	=	NC_067220.1	0
Chromosome 2	CM034326.1	=	NC_067221.1	0
Chromosome 3	CM034327.1	=	NC_067222.1	0
Chromosome 4	CM034328.1	=	NC_067223.1	0
Chromosome 5	CM034329.1	=	NC_067224.1	0
Chromosome 6	CM034330.1	=	NC_067225.1	0
Chromosome 7	CM034331.1	=	NC_067226.1	0
Chromosome 8	CM034332.1	=	NC_067227.1	0
Chromosome 9	CM034333.1	=	NC_067228.1	0
Chromosome 10	CM034334.1	=	NC_067229.1	0
Chromosome 11	CM034335.1	=	NC_067230.1	0
Chromosome 12	CM034336.1	=	NC_067231.1	0
Chromosome 13	CM034337.1	=	NC_067232.1	0
Chromosome 14	CM034338.1	=	NC_067233.1	0
Chromosome 15	CM034339.1	=	NC_067234.1	0
Chromosome 16	CM034340.1	=	NC_067235.1	0
Chromosome 17	CM034341.1	=	NC_067236.1	0
Chromosome 18	CM034342.1	=	NC_067237.1	0
Chromosome 19	CM034343.1	=	NC_067238.1	0
Chromosome 20	CM034344.1	=	NC_067239.1	0
Chromosome 21	CM034345.1	=	NC_067240.1	0
Chromosome 22	CM034346.1	=	NC_067241.1	0
Chromosome 23	CM034347.1	=	NC_067242.1	0
Chromosome 24	CM034348.1	=	NC_067243.1	0
unplaced	n/a	n/a	n/a	6

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	893,198,495	30	893,048,495	35,662,356	150
Chromosome 1	44,834,621	1	44,823,621	44,834,621	11
Chromosome 2	43,201,923	1	43,185,923	43,201,923	16
Chromosome 3	58,213,323	1	58,185,323	58,213,323	28
Chromosome 4	30,301,089	1	30,295,089	30,301,089	6
Chromosome 5	45,256,703	1	45,252,703	45,256,703	4
Chromosome 6	34,646,566	1	34,645,566	34,646,566	1
Chromosome 7	50,754,498	1	50,748,498	50,754,498	6
Chromosome 8	34,874,032	1	34,869,032	34,874,032	5
Chromosome 9	38,853,499	1	38,844,499	38,853,499	9
Chromosome 10	50,170,691	1	50,169,691	50,170,691	1
Chromosome 11	29,194,152	1	29,189,152	29,194,152	5
Chromosome 12	31,673,093	1	31,666,093	31,673,093	7
Chromosome 13	37,700,050	1	37,697,050	37,700,050	3
Chromosome 14	32,772,424	1	32,767,424	32,772,424	5
Chromosome 15	38,442,120	1	38,435,120	38,442,120	7
Chromosome 16	35,603,164	1	35,602,164	35,603,164	1
Chromosome 17	35,662,356	1	35,657,356	35,662,356	5
Chromosome 18	36,744,234	1	36,738,234	36,744,234	6
Chromosome 19	32,971,112	1	32,969,112	32,971,112	2
Chromosome 20	33,436,386	1	33,434,386	33,436,386	2
Chromosome 21	30,413,802	1	30,412,802	30,413,802	1
Chromosome 22	31,093,722	1	31,087,722	31,093,722	6
Chromosome 23	25,826,343	1	25,822,343	25,826,343	4
Chromosome 24	29,255,700	1	29,246,700	29,255,700	9
unplaced	1,302,892	6	1,302,892	909,130	0

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HZGC01

See Genome Information for Ctenopharyngodon idella

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear