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ASM2018417v2

Organism name:
Aphis gossypii (cotton aphid)
Isolate:
Hap1
BioSample:
SAMN18623971
BioProject:
PRJNA719918
Submitter:
Yangzhou University
Date:
2021/09/30
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_020184175.2 (latest)
RefSeq assembly accession:
GCF_020184175.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAGTJE01
Assembly method:
Canu v. 1.5; WTDBG v. 2.1; Pilon v. 1.22; LACHESIS v. 1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
PacBio; Illumina HiSeq

IDs: 13470551 [UID] 35139398 [GenBank] 35175788 [RefSeq]

See Genome Information for Aphis gossypii

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length334,871,293
Total ungapped length334,842,848
Gaps between scaffolds0
Number of scaffolds505
Scaffold N5089,127,860
Scaffold L502
Number of contigs748
Contig N503,973,335
Contig L5021
Total number of chromosomes and plasmids5
Number of component sequences (WGS or clone)505

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_020184185.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM035051.1=NC_065530.10
Chromosome 2CM035052.1=NC_065531.10
Chromosome 3CM035053.1=NC_065532.10
Chromosome XCM035054.1=NC_065533.10
unplacedn/an/an/a500

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All334,855,424504334,826,97989,127,8602430
Chromosome 189,435,083189,430,78389,435,083430
Chromosome 289,127,860189,124,46089,127,860340
Chromosome 356,067,891156,063,69156,067,891420
Chromosome X64,934,150164,921,95064,934,1501220
unplaced35,290,44050035,286,09581,29120
MoleculeTotal
Length
Mitochondrion MT15,869