Dpon_F_20191213v2

Description:: Female Dendroctonus ponderosae 20191213
Organism name:: Dendroctonus ponderosae (mountain pine beetle)
Isolate:: FM_Combo_2020
Sex:: female
BioSample:: SAMN16793753
BioProject:: PRJNA638278
Submitter:: Natural Resources Canada
Date:: 2021/10/13
Assembly level:: Scaffold
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_020466585.2 (latest)
RefSeq assembly accession:: GCF_020466585.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAFETG01
Assembly method:: Dovetail Genomics HiRise scaffolding v. DEC-2017;ALLMAPS v. 0.8.12;LINKS v. 1.8.7;RAILS v. 1.4.1;ABySS-Sealer v. 2.1.5_1;PhylOligo v. 1.0
Expected final version:: yes
Genome coverage:: 747x
Sequencing technology:: Illumina HiSeq

IDs: 12708701 [UID] 33241098 [GenBank] 33758338 [RefSeq]

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_020466585.2	=	GCF_020466585.1	Dpon_F_20191213v2	Scaffold	Latest GenBank, Latest RefSeq
GCA_020466585.1	n/a	n/a	Dpon_F_20191213	Scaffold	Replaced GenBank

In May 2022 24 sequences were suppressed because they were found to be contaminants.

Total sequence length	223,597,517
Total ungapped length	213,852,230
Gaps between scaffolds	0
Number of scaffolds	2,112
Scaffold N50	16,553,750
Scaffold L50	4
Number of contigs	20,222
Contig N50	26,086
Contig L50	2,134
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	2,112