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Source database (GenBank or RefSeq) File type

ASM2061545v1

Organism name:

Coregonus clupeaformis (lake whitefish)

Isolate:

EN_2021a

Sex:

female

BioSample:

SAMN21920801

BioProject:

PRJNA767633

Submitter:

Laval University

Date:

2021/11/04

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_020615455.1 (latest)

RefSeq assembly accession:

GCF_020615455.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

JAJAFO01

Assembly method:

Flye v. 2.5

Expected final version:

yes

Genome coverage:

20.0x

Sequencing technology:

Oxford Nanopore PromethION

IDs: 11377861 [UID] 29951868 [GenBank] 30152618 [RefSeq]

See Genome Information for Coregonus clupeaformis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_020615455.1	≠	GCF_020615455.1	ASM2061545v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,753,287,365
Total ungapped length	2,753,166,488
Gaps between scaffolds	0
Number of scaffolds	7,334
Scaffold N50	52,021,072
Scaffold L50	22
Number of contigs	8,493
Contig N50	2,177,185
Contig L50	274
Total number of chromosomes and plasmids	41
Number of component sequences (WGS or clone)	7,334

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM036432.1	=	NC_059192.1	0
Chromosome 2	CM036433.1	=	NC_059193.1	0
Chromosome 3	CM036434.1	=	NC_059194.1	0
Chromosome 4	CM036435.1	=	NC_059195.1	0
Chromosome 5	CM036436.1	=	NC_059196.1	0
Chromosome 6	CM036437.1	=	NC_059197.1	0
Chromosome 7	CM036438.1	=	NC_059198.1	0
Chromosome 8	CM036439.1	=	NC_059199.1	0
Chromosome 9	CM036440.1	=	NC_059200.1	0
Chromosome 10	CM036441.1	=	NC_059201.1	0
Chromosome 11	CM036442.1	=	NC_059202.1	0
Chromosome 12	CM036443.1	=	NC_059203.1	0
Chromosome 13	CM036444.1	=	NC_059204.1	0
Chromosome 14	CM036445.1	=	NC_059205.1	0
Chromosome 15	CM036446.1	=	NC_059206.1	0
Chromosome 16	CM036447.1	=	NC_059207.1	0
Chromosome 17	CM036448.1	=	NC_059208.1	0
Chromosome 18	CM036449.1	=	NC_059209.1	0
Chromosome 19	CM036450.1	=	NC_059210.1	0
Chromosome 20	CM036451.1	=	NC_059211.1	0
Chromosome 21	CM036452.1	=	NC_059212.1	0
Chromosome 22	CM036453.1	=	NC_059213.1	0
Chromosome 23	CM036454.1	=	NC_059214.1	0
Chromosome 24	CM036455.1	=	NC_059215.1	0
Chromosome 25	CM036456.1	=	NC_059216.1	0
Chromosome 26	CM036457.1	=	NC_059217.1	0
Chromosome 27	CM036458.1	=	NC_059218.1	0
Chromosome 28	CM036459.1	=	NC_059219.1	0
Chromosome 29	CM036460.1	=	NC_059220.1	0
Chromosome 30	CM036461.1	=	NC_059221.1	0
Chromosome 31	CM036462.1	=	NC_059222.1	0
Chromosome 32	CM036463.1	=	NC_059223.1	0
Chromosome 33	CM036464.1	=	NC_059224.1	0
Chromosome 34	CM036465.1	=	NC_059225.1	0
Chromosome 35	CM036466.1	=	NC_059226.1	0
Chromosome 36	CM036467.1	=	NC_059227.1	0
Chromosome 37	CM036468.1	=	NC_059228.1	0
Chromosome 38	CM036469.1	=	NC_059229.1	0
Chromosome 39	CM036470.1	=	NC_059230.1	0
Chromosome 40	CM036471.1	=	NC_059231.1	0
unplaced	n/a	n/a	n/a	7,293

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,753,270,621	7,333	2,753,149,744	52,021,072	1,159
Chromosome 1	99,647,553	1	99,639,086	99,647,553	65
Chromosome 2	41,124,232	1	41,122,649	41,124,232	20
Chromosome 3	46,465,375	1	46,463,436	46,465,375	21
Chromosome 4	24,638,154	1	24,636,857	24,638,154	14
Chromosome 5	46,811,756	1	46,809,745	46,811,756	22
Chromosome 6	53,557,343	1	53,554,904	53,557,343	29
Chromosome 7	75,700,689	1	75,696,954	75,700,689	50
Chromosome 8	67,322,444	1	67,319,577	67,322,444	35
Chromosome 9	57,369,764	1	57,368,210	57,369,764	20
Chromosome 10	65,173,410	1	65,171,235	65,173,410	26
Chromosome 11	53,688,304	1	53,686,274	53,688,304	24
Chromosome 12	63,013,705	1	63,011,901	63,013,705	25
Chromosome 13	58,121,391	1	58,120,175	58,121,391	17
Chromosome 14	47,432,639	1	47,431,104	47,432,639	18
Chromosome 15	67,166,224	1	67,160,264	67,166,224	62
Chromosome 16	60,435,463	1	60,433,197	60,435,463	23
Chromosome 17	74,316,692	1	74,312,291	74,316,692	59
Chromosome 18	58,314,450	1	58,311,860	58,314,450	28
Chromosome 19	59,020,726	1	59,018,450	59,020,726	27
Chromosome 20	65,498,856	1	65,495,668	65,498,856	41
Chromosome 21	58,500,128	1	58,498,219	58,500,128	24
Chromosome 22	4,585,798	1	4,584,769	4,585,798	12
Chromosome 23	60,949,925	1	60,947,474	60,949,925	29
Chromosome 24	62,119,580	1	62,117,217	62,119,580	26
Chromosome 25	37,335,506	1	37,334,532	37,335,506	11
Chromosome 26	52,021,072	1	52,018,943	52,021,072	26
Chromosome 27	52,301,279	1	52,299,274	52,301,279	24
Chromosome 28	36,210,064	1	36,206,494	36,210,064	53
Chromosome 29	66,088,922	1	66,085,946	66,088,922	36
Chromosome 30	54,254,234	1	54,252,089	54,254,234	27
Chromosome 31	47,351,403	1	47,350,133	47,351,403	17
Chromosome 32	6,873,100	1	6,871,617	6,873,100	16
Chromosome 33	42,903,434	1	42,901,559	42,903,434	21
Chromosome 34	45,614,687	1	45,613,510	45,614,687	18
Chromosome 35	42,958,922	1	42,954,948	42,958,922	54
Chromosome 36	42,393,303	1	42,391,760	42,393,303	18
Chromosome 37	36,034,667	1	36,033,399	36,034,667	16
Chromosome 38	6,770,662	1	6,769,652	6,770,662	12
Chromosome 39	20,622,260	1	20,620,829	20,622,260	18
Chromosome 40	36,666,795	1	36,664,921	36,666,795	21
unplaced	755,895,710	7,293	755,868,622	259,565	54

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Download Assembly

ASM2061545v1

See Genome Information for Coregonus clupeaformis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear