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Source database (GenBank or RefSeq) File type

ASM2063170v1.1

Organism name:

Daphnia magna (crustaceans)

Isolate:

NIES

Sex:

female

BioSample:

SAMN19716601

BioProject:

PRJNA738190

Submitter:

Sungkyunkwan University

Date:

2021/10/27

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_020631705.2 (latest)

RefSeq assembly accession:

GCF_020631705.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAIFAF01

Assembly method:

SMARTdenovo v. 1.0; medaka v. 0.12.1; Chromonomer v. 1.08

Expected final version:

yes

Genome coverage:

243.0x

Sequencing technology:

Oxford Nanopore PromethION; Illumina HiSeq

IDs: 11402061 [UID] 30042818 [GenBank] 30144168 [RefSeq]

See Genome Information for Daphnia magna

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_020631705.2	≠	GCF_020631705.1	ASM2063170v1.1	Chromosome	Latest GenBank, Latest RefSeq
GCA_020631705.1	n/a	n/a	ASM2063170v1	Chromosome	Replaced GenBank

Comment

In November 2021 185 sequences were suppressed because they were found to be contaminants

Global statistics

Total sequence length	161,467,056
Total ungapped length	161,454,656
Gaps between scaffolds	0
Number of scaffolds	309
Scaffold N50	12,546,303
Scaffold L50	6
Number of contigs	433
Contig N50	1,507,563
Contig L50	32
Total number of chromosomes and plasmids	11
Number of component sequences (WGS or clone)	309

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG1	CM036142.1	=	NC_059182.1	0
Linkage Group LG2	CM036143.1	=	NC_059183.1	0
Linkage Group LG3	CM036144.1	=	NC_059184.1	0
Linkage Group LG4	CM036145.1	=	NC_059185.1	0
Linkage Group LG5	CM036146.1	=	NC_059186.1	0
Linkage Group LG6	CM036147.1	=	NC_059187.1	0
Linkage Group LG7	CM036148.1	=	NC_059188.1	0
Linkage Group LG8	CM036149.1	=	NC_059189.1	0
Linkage Group LG9	CM036150.1	=	NC_059190.1	0
Linkage Group LG10	CM036151.1	=	NC_059191.1	0
unplaced	n/a	n/a	n/a	298

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	161,452,108	308	161,439,708	12,546,303	124
Linkage Group LG1	19,099,978	1	19,098,078	19,099,978	19
Linkage Group LG2	19,071,972	1	19,070,672	19,071,972	13
Linkage Group LG3	13,906,530	1	13,905,330	13,906,530	12
Linkage Group LG4	13,367,246	1	13,366,346	13,367,246	9
Linkage Group LG5	12,546,303	1	12,544,803	12,546,303	15
Linkage Group LG6	10,412,214	1	10,411,714	10,412,214	5
Linkage Group LG7	13,691,525	1	13,690,225	13,691,525	13
Linkage Group LG8	11,189,478	1	11,188,478	11,189,478	10
Linkage Group LG9	10,292,723	1	10,291,023	10,292,723	17
Linkage Group LG10	9,714,962	1	9,713,862	9,714,962	11
unplaced	28,159,177	298	28,159,177	125,922	0

Assembly

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Download Assembly

ASM2063170v1.1

See Genome Information for Daphnia magna

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear