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mLemCat1.pri

Organism name:
Lemur catta (Ring-tailed lemur)
Isolate:
mLemCat1
Sex:
male
BioSample:
SAMN12621102
BioProject:
PRJNA561949
Submitter:
Vertebrate Genomes Project
Date:
2021/11/04
Assembly type:
haploid (principal pseudohaplotype of diploid)
Release type:
minor
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_020740605.1 (latest)
RefSeq assembly accession:
GCF_020740605.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAJGPY01
Assembly method:
hifiasm v. 0.12-r304; purge_dups v. 1.2.5; bionano_solve v. Solve3.6.1_11162020; salsa2 v. v2.2; gEVAL manual curation v. 2021-07-16
Expected final version:
no
Genome coverage:
20.81x
Sequencing technology:
Pacbio Sequel II CCS; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics v1 Hi-C
Linked assembly:
GCA_020740595.1 (alternate pseudohaplotype of diploid)

IDs: 11377871 [UID] 29951878 [GenBank] 30504118 [RefSeq]

See Genome Information for Lemur catta

Pathogen Detection Resources

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,245,601,549
Total ungapped length2,241,959,928
Gaps between scaffolds0
Number of scaffolds185
Scaffold N50102,162,704
Scaffold L509
Number of contigs395
Contig N5032,529,614
Contig L5020
Total number of chromosomes and plasmids30
Number of component sequences (WGS or clone)185

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_020740655.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM036472.1=NC_059128.10
Chromosome 2CM036473.1=NC_059129.10
Chromosome 3CM036474.1=NC_059130.10
Chromosome 4CM036475.1=NC_059131.10
Chromosome 5CM036476.1=NC_059132.10
Chromosome 6CM036477.1=NC_059133.10
Chromosome 7CM036478.1=NC_059134.10
Chromosome 8CM036479.1=NC_059135.10
Chromosome 9CM036480.1=NC_059136.10
Chromosome 10CM036481.1=NC_059137.19
Chromosome 11CM036482.1=NC_059138.10
Chromosome 12CM036483.1=NC_059139.10
Chromosome 13CM036484.1=NC_059140.10
Chromosome 14CM036485.1=NC_059141.10
Chromosome 15CM036486.1=NC_059142.10
Chromosome 16CM036487.1=NC_059143.10
Chromosome 17CM036488.1=NC_059144.10
Chromosome 18CM036489.1=NC_059145.10
Chromosome 19CM036490.1=NC_059146.10
Chromosome 20CM036491.1=NC_059147.11
Chromosome 21CM036492.1=NC_059148.10
Chromosome 22CM036493.1=NC_059149.10
Chromosome 23CM036494.1=NC_059150.10
Chromosome 24CM036495.1=NC_059151.10
Chromosome 25CM036496.1=NC_059152.10
Chromosome 26CM036497.1=NC_059153.10
Chromosome 27CM036498.1=NC_059154.10
Chromosome XCM036499.1=NC_059155.10
Chromosome YCM036500.1=NC_059156.10
unplacedn/an/an/a145

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,245,584,4631842,241,942,842102,162,7042100
Chromosome 1Assembled molecule286,674,9461286,314,273286,674,946220
Chromosome 2Assembled molecule147,489,6331147,488,820147,489,63380
Chromosome 3Assembled molecule126,926,3521126,833,320126,926,352160
Chromosome 4Assembled molecule117,448,9251117,378,150117,448,92550
Chromosome 5Assembled molecule114,043,9611114,043,061114,043,96150
Chromosome 6Assembled molecule109,667,0371109,664,837109,667,037150
Chromosome 7Assembled molecule108,754,0001108,753,174108,754,00050
Chromosome 8Assembled molecule103,682,4051103,682,092103,682,40540
Chromosome 9Assembled molecule102,162,7041102,161,091102,162,704120
Chromosome 10AllAssembled moleculeUnlocalized scaffolds102,112,67993,510,3808,602,2991019102,110,86693,508,5678,602,29993,510,38093,510,3801,534,77811110000
Chromosome 11Assembled molecule99,922,226199,921,50099,922,22670
Chromosome 12Assembled molecule99,277,061199,275,76199,277,06170
Chromosome 13Assembled molecule84,040,924184,037,68584,040,924180
Chromosome 14Assembled molecule70,886,106170,886,00670,886,10610
Chromosome 15Assembled molecule57,765,672157,765,57257,765,67210
Chromosome 16Assembled molecule56,653,852156,653,53956,653,85240
Chromosome 17Assembled molecule51,633,263151,633,16351,633,26310
Chromosome 18Assembled molecule49,360,328149,360,02849,360,32820
Chromosome 19Assembled molecule37,494,493137,461,45937,494,49330
Chromosome 20AllAssembled moleculeUnlocalized scaffolds35,150,67634,904,378246,29821135,011,55634,765,271246,28534,904,37834,904,378246,298761000
Chromosome 21Assembled molecule34,588,564134,587,26434,588,56480
Chromosome 22Assembled molecule31,472,186131,471,87331,472,18640
Chromosome 23Assembled molecule30,841,577130,841,57730,841,57700
Chromosome 24Assembled molecule16,987,551116,987,05116,987,55140
Chromosome 25Assembled molecule14,521,788114,373,02614,521,78840
Chromosome 26Assembled molecule9,714,57819,713,7789,714,57840
Chromosome 27Assembled molecule1,917,24911,859,6371,917,24930
Chromosome XAssembled molecule73,531,725171,100,70673,531,725150
Chromosome YAssembled molecule6,804,70916,659,9186,804,70970
unplacedAssembled molecule64,057,29314563,912,0591,574,56870
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT17,086117,08617,08600