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bApuApu2.pri.cur

Organism name:
Apus apus (common swift)
Isolate:
bApuApu2
Sex:
female
BioSample:
SAMN22785356
BioProject:
PRJNA776336
Submitter:
Vertebrate Genomes Project
Date:
2021/11/04
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_020740795.1 (latest)
RefSeq assembly accession:
GCF_020740795.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAJGQY01
Assembly method:
FALCON-kit v. 1.8.1; FALCON-Unzip v. 1.3.7; purge-dups v. 0.0.3; Longranger v. 2.2.2; scaff10X v. 4.2; Bionano solve v. 3.5.1; Salsa2 v. 2.2.0; dentist v. 1.0.0; Freebays v. 1.3.2; gEVAL manual curation v. 2021-06-17
Expected final version:
no
Genome coverage:
103.36x
Sequencing technology:
PacBio Sequel I CLR; Bionano Genomics DLS; Arima Genomics Hi-C; 10X Genomics linked reads
Linked assembly:
GCA_020740585.1 (alternate pseudohaplotype of diploid)

IDs: 11377901 [UID] 29951918 [GenBank] 36984268 [RefSeq]

See Genome Information for Apus apus

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,100,378,261
Total ungapped length1,098,630,732
Gaps between scaffolds0
Number of scaffolds110
Scaffold N50115,508,478
Scaffold L504
Number of contigs366
Contig N5025,561,769
Contig L5013
Total number of chromosomes and plasmids32
Number of component sequences (WGS or clone)110

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_020740805.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM036503.1=NC_067282.11
Chromosome 2CM036504.1=NC_067283.10
Chromosome 3CM036505.1=NC_067284.10
Chromosome 4CM036506.1=NC_067285.10
Chromosome 5CM036507.1=NC_067286.10
Chromosome 6CM036508.1=NC_067287.10
Chromosome 7CM036509.1=NC_067288.10
Chromosome 8CM036510.1=NC_067289.10
Chromosome 9CM036511.1=NC_067290.10
Chromosome 10CM036512.1=NC_067291.10
Chromosome 11CM036513.1=NC_067292.10
Chromosome 12CM036514.1=NC_067293.10
Chromosome 13CM036515.1=NC_067294.10
Chromosome 14CM036516.1=NC_067295.10
Chromosome 15CM036517.1=NC_067296.10
Chromosome 16CM036518.1=NC_067297.10
Chromosome 17CM036519.1=NC_067298.10
Chromosome 18CM036520.1=NC_067299.10
Chromosome 19CM036521.1=NC_067300.10
Chromosome 20CM036522.1=NC_067301.10
Chromosome 21CM036523.1=NC_067302.10
Chromosome 22CM036524.1=NC_067303.10
Chromosome 23CM036525.1=NC_067304.10
Chromosome 24CM036526.1=NC_067305.10
Chromosome 25CM036527.1=NC_067306.10
Chromosome 26CM036528.1=NC_067307.10
Chromosome 27CM036529.1=NC_067308.10
Chromosome 28CM036530.1=NC_067309.12
Chromosome 29CM036531.1=NC_067310.10
Chromosome WCM036532.1=NC_067311.12
Chromosome ZCM036533.1=NC_067312.10
unplacedn/an/an/a73

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,100,361,2241091,098,613,695115,508,4782560
Chromosome 1AllAssembled moleculeUnlocalized scaffolds206,516,106206,448,96967,137211206,416,577206,349,44067,137206,448,969206,448,96967,13720200000
Chromosome 2Assembled molecule157,038,8861157,036,578157,038,886170
Chromosome 3Assembled molecule118,118,7001118,117,890118,118,70070
Chromosome 4Assembled molecule115,508,4781115,436,407115,508,478130
Chromosome 5Assembled molecule66,458,660166,423,35566,458,660100
Chromosome 6Assembled molecule39,957,907139,885,64239,957,90730
Chromosome 7Assembled molecule31,910,893131,910,89331,910,89300
Chromosome 8Assembled molecule26,880,876126,833,57326,880,87660
Chromosome 9Assembled molecule21,930,077121,930,07721,930,07700
Chromosome 10Assembled molecule21,766,669121,738,67421,766,66930
Chromosome 11Assembled molecule21,046,901121,046,20321,046,90150
Chromosome 12Assembled molecule20,758,364120,758,05320,758,36440
Chromosome 13Assembled molecule19,374,202119,374,00219,374,20220
Chromosome 14Assembled molecule17,217,432117,217,03217,217,43220
Chromosome 15Assembled molecule15,759,960115,759,96015,759,96000
Chromosome 16Assembled molecule14,928,149114,912,15014,928,14940
Chromosome 17Assembled molecule12,704,414112,704,41412,704,41400
Chromosome 18Assembled molecule12,129,945112,038,40612,129,94540
Chromosome 19Assembled molecule11,935,563111,935,36911,935,56320
Chromosome 20Assembled molecule8,468,14718,467,9548,468,14720
Chromosome 21Assembled molecule7,619,90617,619,8077,619,90610
Chromosome 22Assembled molecule7,358,78717,358,6897,358,78710
Chromosome 23Assembled molecule6,883,04116,882,3476,883,04130
Chromosome 24Assembled molecule6,553,87016,545,2236,553,870150
Chromosome 25Assembled molecule6,312,35415,951,2146,312,354100
Chromosome 26Assembled molecule5,517,09615,443,8525,517,096160
Chromosome 27Assembled molecule2,352,09812,350,1602,352,098100
Chromosome 28AllAssembled moleculeUnlocalized scaffolds1,782,4191,591,093191,3263121,780,8881,589,657191,2311,591,0931,591,093147,695651000
Chromosome 29Assembled molecule688,4161687,476688,41630
Chromosome WAllAssembled moleculeUnlocalized scaffolds11,608,79610,967,425641,37131211,098,79210,492,775606,01710,967,42510,967,425562,35546442000
Chromosome ZAssembled molecule77,839,815177,526,04677,839,81580
unplacedAssembled molecule5,434,297735,425,992141,784330
MoleculeTotal
Length
Mitochondrion MT17,037