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ASM2080742v1

Organism name:
Shigella sp. FC6499 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FC6499
BioSample:
SAMN14730477
BioProject:
PRJNA628068
Submitter:
Ministry of Science and Technology of China
Date:
2021/11/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_020807425.1 (latest)
RefSeq assembly accession:
GCF_020807425.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAJHCO01
Assembly method:
SOAPdenovo v. 2.04; SPAdes v. 3.10.0; Abyss v. 1.3.7
Expected final version:
yes
Genome coverage:
54x
Sequencing technology:
Illumina MiSeq

IDs: 11410411 [UID] 30050608 [GenBank] 30069258 [RefSeq]

See Genome Information for Shigella sp. FC6499

History (Show revision history)

Comment

Global statistics

Total sequence length4,501,740
Total ungapped length4,501,740
Number of contigs338
Contig N5033,446
Contig L5043
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)338

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,501,7403384,501,74033,44600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Shigella sp. FC6499Shigella sp. FC6499

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002950215.1Shigella flexneritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.9796.7788.21

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna