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ASM2086692v1

Organism name:
Lysobacter lactosilyticus (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: A6
BioSample:
SAMN22629874
BioProject:
PRJNA775836
Submitter:
Nanyang Normal University
Date:
2021/11/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_020866925.1 (latest)
RefSeq assembly accession:
GCF_020866925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAJGAK01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
189.0x
Sequencing technology:
Illumina HiSeq

IDs: 11445051 [UID] 30136198 [GenBank] 30367068 [RefSeq]

See Genome Information for Lysobacter lactosilyticus

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/29/2021 13:12:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,311
CDSs (total)::3,254
Genes (coding)::3,207
CDSs (with protein)::3,207
Genes (RNA)::57
rRNAs::1, 2, 2 (5S, 16S, 23S)
complete rRNAs::1, 1, 2 (5S, 16S, 23S)
partial rRNAs::1 (16S)
tRNAs::48
ncRNAs::4
Pseudo Genes (total)::47
CDSs (without protein)::47
Pseudo Genes (ambiguous residues)::0 of 47
Pseudo Genes (frameshifted)::3 of 47
Pseudo Genes (incomplete)::43 of 47
Pseudo Genes (internal stop)::3 of 47
Pseudo Genes (multiple problems)::2 of 47
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,423,651
Total ungapped length3,423,365
Gaps between scaffolds0
Number of scaffolds11
Scaffold N501,922,247
Scaffold L501
Number of contigs14
Contig N50912,095
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)11

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,423,651113,423,3651,922,24730

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lysobacter lactosilyticusLysobacter lactosilyticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009740395.1Lysobacter gilvustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.9863.0563.75

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected