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Source database (GenBank or RefSeq) File type

ASM2113471v1

Organism name:

Daphnia pulex (common water flea)

Isolate:

KAP4

Sex:

pooled male and female

BioSample:

SAMN22866247

BioProject:

PRJNA777597

Submitter:

Arizona State University

Date:

2021/12/09

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_021134715.1 (latest)

RefSeq assembly accession:

GCF_021134715.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

Assembly method:

Hifiasm v. 0.16

Expected final version:

yes

Genome coverage:

50.0x

Sequencing technology:

PacBio Sequel

IDs: 11589891 [UID] 30522258 [GenBank] 30810388 [RefSeq]

See Genome Information for Daphnia pulex

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_021134715.1	≠	GCF_021134715.1	ASM2113471v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Status::Full annotation
Annotation Name::Daphnia pulex Annotation Release 100
Annotation Version::100
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::9.0
Annotation Method::Best-placed RefSeq; Gnomon
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	133,196,385
Total ungapped length	133,195,985
Gaps between scaffolds	0
Number of scaffolds	13
Scaffold N50	12,288,052
Scaffold L50	5
Number of contigs	17
Contig N50	8,301,990
Contig L50	6
Total number of chromosomes and plasmids	13
Number of component sequences (WGS or clone)	13

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	CP087239.1	=	NC_060017.1
Chromosome 2	CP087240.1	=	NC_060018.1
Chromosome 3	CP087241.1	=	NC_060019.1
Chromosome 4	CP087242.1	=	NC_060020.1
Chromosome 5	CP087243.1	=	NC_060021.1
Chromosome 6	CP087244.1	=	NC_060022.1
Chromosome 7	CP087245.1	=	NC_060023.1
Chromosome 8	CP087246.1	=	NC_060024.1
Chromosome 9	CP087247.1	=	NC_060025.1
Chromosome 10	CP087248.1	=	NC_060026.1
Chromosome 11	CP087249.1	=	NC_060027.1
Chromosome 12	CP087250.1	=	NC_060028.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	133,181,052	12	133,180,652	12,288,052	4
Chromosome 1	8,301,990	1	8,301,990	8,301,990	0
Chromosome 2	13,352,584	1	13,352,484	13,352,584	1
Chromosome 3	13,279,582	1	13,279,582	13,279,582	0
Chromosome 4	9,193,997	1	9,193,897	9,193,997	1
Chromosome 5	11,979,496	1	11,979,496	11,979,496	0
Chromosome 6	7,255,302	1	7,255,302	7,255,302	0
Chromosome 7	12,288,052	1	12,288,052	12,288,052	0
Chromosome 8	14,242,098	1	14,241,998	14,242,098	1
Chromosome 9	9,596,697	1	9,596,697	9,596,697	0
Chromosome 10	16,340,441	1	16,340,441	16,340,441	0
Chromosome 11	6,605,251	1	6,605,251	6,605,251	0
Chromosome 12	10,745,562	1	10,745,462	10,745,562	1

Assembly

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ASM2113471v1

See Genome Information for Daphnia pulex

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Assembly Unit Name
Primary Assembly
non-nuclear