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Marmota_monax_Labrador192_V1.0

Organism name:
Marmota monax (woodchuck)
Isolate:
L192
Sex:
male
BioSample:
SAMN21332666
BioProject:
PRJNA761405
Submitter:
Hospital for Sick Children
Date:
2021/12/15
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_021218885.1 (replaced)
RefSeq assembly accession:
GCF_021218885.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAIQCD01
Assembly method:
Flye v. 2.8; freebayes v. 1.3.1
Expected final version:
no
Genome coverage:
77.2x
Sequencing technology:
PacBio Sequel; Illumina HiSeq

IDs: 11641141 [UID] 30651988 [GenBank] 30945488 [RefSeq]

See Genome Information for Marmota monax

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,638,778,829
Total ungapped length2,638,774,229
Gaps between scaffolds0
Number of scaffolds3,335
Scaffold N5011,523,559
Scaffold L5060
Number of contigs3,381
Contig N5010,671,126
Contig L5066
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3,381

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,638,778,8293,3352,638,774,22911,523,559460