SC_F0-13Bv2

Organism name:: Daphnia pulicaria (crustaceans)
Isolate:: SC F1-1A
BioSample:: SAMN21387128
BioProject:: PRJNA762352
Submitter:: University of Oklahoma
Date:: 2022/01/11
Assembly type:: haploid (principal pseudohaplotype of diploid)
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_021234035.2 (latest)
RefSeq assembly accession:: GCF_021234035.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAJAGA01
Assembly method:: hifiasm v. 1; LepAnchor v. 1
Expected final version:: no
Genome coverage:: 60x
Sequencing technology:: PacBio Sequel; Illumina HiSeq

IDs: 12077441 [UID] 31676028 [GenBank] 31815658 [RefSeq]

See Genome Information for Daphnia pulicaria

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_021234035.2	=	GCF_021234035.1	SC_F0-13Bv2	Chromosome	Latest GenBank, Latest RefSeq
GCA_021234035.1	n/a	n/a	SC_F0-13B	Chromosome	Replaced GenBank

Comment

In February 2022 5 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	185,057,732
Total ungapped length	185,043,332
Gaps between scaffolds	0
Number of scaffolds	155
Scaffold N50	18,885,472
Scaffold L50	4
Number of contigs	299
Contig N50	3,523,768
Contig L50	16
Total number of chromosomes and plasmids	12
Number of component sequences (WGS or clone)	155

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM038024.1	=	NC_060913.1	0
Chromosome 2	CM038025.1	=	NC_060914.1	0
Chromosome 3	CM038026.1	=	NC_060915.1	0
Chromosome 4	CM038027.1	=	NC_060916.1	0
Chromosome 5	CM038028.1	=	NC_060917.1	0
Chromosome 6	CM038029.1	=	NC_060918.1	0
Chromosome 7	CM038030.1	=	NC_060919.1	0
Chromosome 8	CM038031.1	=	NC_060920.1	0
Chromosome 9	CM038032.1	=	NC_060921.1	0
Chromosome 10	CM038033.1	=	NC_060922.1	0
Chromosome 11	CM038034.1	=	NC_060923.1	0
Chromosome 12	CM038035.1	=	NC_060924.1	0
unplaced	n/a	n/a	n/a	143

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	185,057,732	155	185,043,332	18,885,472	144
Chromosome 1	43,499,656	1	43,495,356	43,499,656	43
Chromosome 2	12,938,585	1	12,937,885	12,938,585	7
Chromosome 3	13,523,868	1	13,521,868	13,523,868	20
Chromosome 4	22,509,579	1	22,508,279	22,509,579	13
Chromosome 5	7,288,624	1	7,287,924	7,288,624	7
Chromosome 6	24,200,786	1	24,197,786	24,200,786	30
Chromosome 7	18,885,472	1	18,884,272	18,885,472	12
Chromosome 8	15,869,501	1	15,869,301	15,869,501	2
Chromosome 9	4,432,852	1	4,432,652	4,432,852	2
Chromosome 10	7,571,162	1	7,570,962	7,571,162	2
Chromosome 11	4,626,280	1	4,625,880	4,626,280	4
Chromosome 12	3,231,808	1	3,231,608	3,231,808	2
unplaced	6,479,559	143	6,479,559	45,709	0

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SC_F0-13Bv2

See Genome Information for Daphnia pulicaria

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

Comment

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