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Source database (GenBank or RefSeq) File type

ASM2129224v1

Organism name:

Micropterus dolomieu (smallmouth bass)

Infraspecific name:

Ecotype: Adirondacks

Isolate:

WLL.071019.BEF.003

BioSample:

SAMN22851699

BioProject:

PRJNA777359

Submitter:

Cornell University

Date:

2022/01/11

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_021292245.1 (latest)

RefSeq assembly accession:

GCF_021292245.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAJNER01

Assembly method:

MaSuRCA v. 3.4.0

Expected final version:

Reference guided assembly:

GCA_014851395.1

Genome coverage:

50.0x

Sequencing technology:

Illumina HiSeq

IDs: 11738111 [UID] 30897018 [GenBank] 31127988 [RefSeq]

See Genome Information for Micropterus dolomieu

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_021292245.1	≠	GCF_021292245.1	ASM2129224v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	829,587,215
Total ungapped length	826,581,453
Gaps between scaffolds	0
Number of scaffolds	15,020
Scaffold N50	34,173,225
Scaffold L50	11
Number of contigs	49,601
Contig N50	46,775
Contig L50	4,983
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	15,020

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG01	CM037965.1	=	NC_060150.1	0
Linkage Group LG02	CM037966.1	=	NC_060151.1	0
Linkage Group LG03	CM037967.1	=	NC_060152.1	0
Linkage Group LG04	CM037968.1	=	NC_060153.1	0
Linkage Group LG05	CM037969.1	=	NC_060154.1	0
Linkage Group LG06	CM037970.1	=	NC_060155.1	0
Linkage Group LG07	CM037971.1	=	NC_060156.1	0
Linkage Group LG08	CM037972.1	=	NC_060157.1	0
Linkage Group LG09	CM037973.1	=	NC_060158.1	0
Linkage Group LG10	CM037974.1	=	NC_060159.1	0
Linkage Group LG11	CM037975.1	=	NC_060160.1	0
Linkage Group LG12	CM037976.1	=	NC_060161.1	0
Linkage Group LG13	CM037977.1	=	NC_060162.1	0
Linkage Group LG14	CM037978.1	=	NC_060163.1	0
Linkage Group LG15	CM037979.1	=	NC_060164.1	0
Linkage Group LG16	CM037980.1	=	NC_060165.1	0
Linkage Group LG17	CM037981.1	=	NC_060166.1	0
Linkage Group LG18	CM037982.1	=	NC_060167.1	0
Linkage Group LG19	CM037983.1	=	NC_060168.1	0
Linkage Group LG20	CM037984.1	=	NC_060169.1	0
Linkage Group LG21	CM037985.1	=	NC_060170.1	0
Linkage Group LG22	CM037986.1	=	NC_060171.1	0
Linkage Group LG23	CM037987.1	=	NC_060172.1	0
unplaced	n/a	n/a	n/a	14,996

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	829,570,727	15,019	826,564,965	34,173,225	34,581
Linkage Group LG01	55,153,512	1	54,927,389	55,153,512	2,789
Linkage Group LG02	33,140,019	1	33,006,068	33,140,019	1,646
Linkage Group LG03	35,274,882	1	35,133,209	35,274,882	1,405
Linkage Group LG04	34,173,225	1	34,017,353	34,173,225	1,464
Linkage Group LG05	33,637,847	1	33,550,389	33,637,847	1,121
Linkage Group LG06	30,548,458	1	30,465,287	30,548,458	1,120
Linkage Group LG07	32,282,073	1	32,186,816	32,282,073	1,201
Linkage Group LG08	32,915,680	1	32,814,306	32,915,680	1,380
Linkage Group LG09	30,454,629	1	30,354,977	30,454,629	1,324
Linkage Group LG10	29,824,044	1	29,728,281	29,824,044	1,262
Linkage Group LG11	30,820,342	1	30,680,717	30,820,342	1,263
Linkage Group LG12	39,324,673	1	39,150,526	39,324,673	2,357
Linkage Group LG13	30,496,249	1	30,388,905	30,496,249	1,107
Linkage Group LG14	27,787,570	1	27,676,662	27,787,570	1,108
Linkage Group LG15	24,474,386	1	24,400,004	24,474,386	803
Linkage Group LG16	22,175,812	1	22,109,148	22,175,812	842
Linkage Group LG17	39,148,259	1	39,008,391	39,148,259	1,672
Linkage Group LG18	38,863,420	1	38,640,967	38,863,420	1,589
Linkage Group LG19	35,901,028	1	35,721,060	35,901,028	1,496
Linkage Group LG20	37,334,368	1	37,196,758	37,334,368	1,338
Linkage Group LG21	36,307,569	1	36,163,164	36,307,569	1,533
Linkage Group LG22	36,090,486	1	35,969,654	36,090,486	1,414
Linkage Group LG23	36,128,779	1	36,015,023	36,128,779	1,513
unplaced	47,313,417	14,996	47,259,911	8,032	1,834

Assembly

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ASM2129224v1

See Genome Information for Micropterus dolomieu

Pathogen Detection Resources

History (Show revision history)

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Assembly Unit Name
Primary Assembly
non-nuclear