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Source database (GenBank or RefSeq) File type

KAUST_Apoly_ChrSc

Organism name:

Acanthochromis polyacanthus (spiny chromis)

Infraspecific name:

Ecotype: Palm Island

Isolate:

Apoly-LR-REF

BioSample:

SAMN16534234

BioProject:

PRJNA671567

Submitter:

King Abdullah University of Science and Technology

Date:

2022/01/11

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_021347895.1 (latest)

RefSeq assembly accession:

GCF_021347895.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAEMOU01

Assembly method:

Falcon_unzip v. 0.4.0; Proximo v. July-2017

Expected final version:

yes

Genome coverage:

131.0x

Sequencing technology:

PacBio RSII; Hi-C

IDs: 11739471 [UID] 30897978 [GenBank] 36616428 [RefSeq]

See Genome Information for Acanthochromis polyacanthus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_021347895.1	≠	GCF_021347895.1	KAUST_Apoly_ChrSc	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	956,771,783
Total ungapped length	956,697,037
Gaps between scaffolds	0
Number of scaffolds	81
Scaffold N50	41,709,588
Scaffold L50	11
Number of contigs	951
Contig N50	5,524,274
Contig L50	54
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	81

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM038054.1	=	NC_067113.1	0
Chromosome 2	CM038055.1	=	NC_067114.1	0
Chromosome 3	CM038056.1	=	NC_067115.1	0
Chromosome 4	CM038057.1	=	NC_067116.1	0
Chromosome 5	CM038058.1	=	NC_067117.1	0
Chromosome 6	CM038059.1	=	NC_067118.1	0
Chromosome 7	CM038060.1	=	NC_067119.1	0
Chromosome 8	CM038061.1	=	NC_067120.1	0
Chromosome 9	CM038062.1	=	NC_067121.1	0
Chromosome 10	CM038063.1	=	NC_067122.1	0
Chromosome 11	CM038064.1	=	NC_067123.1	0
Chromosome 12	CM038065.1	=	NC_067124.1	0
Chromosome 13	CM038066.1	=	NC_067125.1	0
Chromosome 14	CM038067.1	=	NC_067126.1	0
Chromosome 15	CM038068.1	=	NC_067127.1	0
Chromosome 16	CM038069.1	=	NC_067128.1	0
Chromosome 17	CM038070.1	=	NC_067129.1	0
Chromosome 18	CM038071.1	=	NC_067130.1	0
Chromosome 19	CM038072.1	=	NC_067131.1	0
Chromosome 20	CM038073.1	=	NC_067132.1	0
Chromosome 21	CM038074.1	=	NC_067133.1	0
Chromosome 22	CM038075.1	=	NC_067134.1	0
Chromosome 23	CM038076.1	=	NC_067135.1	0
Chromosome 24	CM038077.1	=	NC_067136.1	0
unplaced	n/a	n/a	n/a	57

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	956,771,783	81	956,697,037	41,709,588	870
Chromosome 1	69,332,575	1	69,330,012	69,332,575	32
Chromosome 2	48,806,739	1	48,804,139	48,806,739	32
Chromosome 3	47,039,003	1	47,035,053	47,039,003	50
Chromosome 4	46,334,589	1	46,330,062	46,334,589	54
Chromosome 5	45,233,076	1	45,229,551	45,233,076	42
Chromosome 6	44,684,549	1	44,679,974	44,684,549	51
Chromosome 7	43,645,223	1	43,643,873	43,645,223	18
Chromosome 8	43,182,508	1	43,178,708	43,182,508	44
Chromosome 9	41,869,585	1	41,864,904	41,869,585	49
Chromosome 10	41,846,870	1	41,844,645	41,846,870	29
Chromosome 11	41,709,588	1	41,705,688	41,709,588	48
Chromosome 12	41,625,312	1	41,623,437	41,625,312	21
Chromosome 13	41,493,654	1	41,490,704	41,493,654	34
Chromosome 14	40,555,546	1	40,552,848	40,555,546	35
Chromosome 15	39,584,561	1	39,581,786	39,584,561	30
Chromosome 16	39,165,182	1	39,162,282	39,165,182	32
Chromosome 17	39,028,890	1	39,027,115	39,028,890	20
Chromosome 18	36,208,793	1	36,206,893	36,208,793	22
Chromosome 19	33,115,632	1	33,113,782	33,115,632	20
Chromosome 20	32,957,332	1	32,955,407	32,957,332	23
Chromosome 21	32,573,490	1	32,570,415	32,573,490	33
Chromosome 22	30,599,377	1	30,590,752	30,599,377	96
Chromosome 23	27,479,827	1	27,477,300	27,479,827	28
Chromosome 24	6,601,023	1	6,598,848	6,601,023	27
unplaced	2,098,859	57	2,098,859	34,841	0

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KAUST_Apoly_ChrSc

See Genome Information for Acanthochromis polyacanthus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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