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ASM2156880v1

Organism name:
Dethiosulfovibrio acidaminovorans (bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: DSM 12590
BioSample:
SAMN14421012
BioProject:
PRJNA613861
Submitter:
Marquette University
Date:
2022/01/24
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_021568805.1 (latest)
RefSeq assembly accession:
GCF_021568805.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAKGUF01
Assembly method:
SPAdes v. 3.13
Expected final version:
yes
Genome coverage:
200x
Sequencing technology:
Illumina NextSeq

IDs: 11803131 [UID] 31083378 [GenBank] 31174918 [RefSeq]

See Genome Information for Dethiosulfovibrio acidaminovorans

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/19/2022 14:47:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,595
CDSs (total)::2,529
Genes (coding)::2,516
CDSs (with protein)::2,516
Genes (RNA)::66
rRNAs::4, 3, 2 (5S, 16S, 23S)
partial rRNAs::4, 3, 2 (5S, 16S, 23S)
tRNAs::54
ncRNAs::3
Pseudo Genes (total)::13
CDSs (without protein)::13
Pseudo Genes (ambiguous residues)::0 of 13
Pseudo Genes (frameshifted)::2 of 13
Pseudo Genes (incomplete)::13 of 13
Pseudo Genes (internal stop)::1 of 13
Pseudo Genes (multiple problems)::2 of 13
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,675,060
Total ungapped length2,674,774
Gaps between scaffolds0
Number of scaffolds68
Scaffold N50103,126
Scaffold L508
Number of contigs71
Contig N50103,126
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)68

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,675,060682,674,774103,12630

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Dethiosulfovibrio acidaminovoransDethiosulfovibrio acidaminovorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_021568855.1Dethiosulfovibrio russensissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.9999.8299.52

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchassembly is type-material