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Source database (GenBank or RefSeq) File type

UCLA_HA_Equagga_1.0

Organism name:

Equus quagga (plains zebra)

Isolate:

Etosha38

BioSample:

SAMN16526506

BioProject:

PRJNA785630

Submitter:

University of California Los Angeles

Date:

2022/01/31

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_021613505.1 (latest)

RefSeq assembly accession:

GCF_021613505.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAKJSB01

Assembly method:

RagTag reference assisted assembly v. 12-19-21; Supernova de novo assembly v. 01-19-2018

Expected final version:

Genome coverage:

48.0x

Sequencing technology:

Illumina HiSeq

IDs: 11891211 [UID] 31266568 [GenBank] 31747978 [RefSeq]

See Genome Information for Equus quagga

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_021613505.1	≠	GCF_021613505.1	UCLA_HA_Equagga_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

The HiC assembly located at https://www.dnazoo.org/assemblies/Equus_quagga was used as the reference assembly for this genome.

Global statistics

Total sequence length	2,500,930,762
Total ungapped length	2,476,985,145
Gaps between scaffolds	0
Number of scaffolds	12,507
Scaffold N50	122,556,673
Scaffold L50	9
Number of contigs	27,132
Contig N50	427,941
Contig L50	1,625
Total number of chromosomes and plasmids	23
Number of component sequences (WGS or clone)	12,507

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM038729.1	=	NC_060267.1	0
Chromosome 2	CM038730.1	=	NC_060268.1	0
Chromosome 3	CM038731.1	=	NC_060269.1	0
Chromosome 4	CM038732.1	=	NC_060270.1	0
Chromosome 5	CM038733.1	=	NC_060271.1	0
Chromosome 6	CM038734.1	=	NC_060272.1	0
Chromosome 7	CM038735.1	=	NC_060273.1	0
Chromosome 8	CM038736.1	=	NC_060274.1	0
Chromosome 9	CM038737.1	=	NC_060275.1	0
Chromosome 10	CM038738.1	=	NC_060276.1	0
Chromosome 11	CM038739.1	=	NC_060277.1	0
Chromosome 12	CM038740.1	=	NC_060278.1	0
Chromosome 13	CM038741.1	=	NC_060279.1	0
Chromosome 14	CM038742.1	=	NC_060280.1	0
Chromosome 15	CM038743.1	=	NC_060281.1	0
Chromosome 16	CM038744.1	=	NC_060282.1	0
Chromosome 17	CM038745.1	=	NC_060283.1	0
Chromosome 18	CM038746.1	=	NC_060284.1	0
Chromosome 19	CM038747.1	=	NC_060285.1	0
Chromosome 20	CM038748.1	=	NC_060286.1	0
Chromosome 21	CM038749.1	=	NC_060287.1	0
Chromosome 22	CM038750.1	=	NC_060288.1	0
unplaced	n/a	n/a	n/a	12,484

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,500,914,156	12,506	2,476,968,739	122,556,673	14,624
Chromosome 1	186,174,912	1	184,777,564	186,174,912	945
Chromosome 2	184,877,488	1	184,040,710	184,877,488	762
Chromosome 3	155,584,316	1	154,648,366	155,584,316	627
Chromosome 4	142,331,337	1	141,716,373	142,331,337	559
Chromosome 5	139,660,790	1	138,821,411	139,660,790	712
Chromosome 6	136,399,747	1	134,117,542	136,399,747	557
Chromosome 7	135,444,500	1	133,200,142	135,444,500	739
Chromosome 8	132,986,330	1	132,509,530	132,986,330	562
Chromosome 9	121,198,693	1	120,114,146	121,198,693	537
Chromosome 10	122,556,673	1	119,027,825	122,556,673	902
Chromosome 11	116,536,076	1	115,768,102	116,536,076	571
Chromosome 12	111,969,383	1	110,533,751	111,969,383	653
Chromosome 13	107,675,105	1	106,364,492	107,675,105	767
Chromosome 14	97,434,454	1	96,319,158	97,434,454	588
Chromosome 15	94,294,920	1	93,288,172	94,294,920	637
Chromosome 16	83,458,741	1	83,163,697	83,458,741	333
Chromosome 17	59,182,139	1	58,711,711	59,182,139	452
Chromosome 18	50,248,907	1	50,155,722	50,248,907	183
Chromosome 19	45,829,797	1	45,488,328	45,829,797	268
Chromosome 20	45,739,406	1	45,472,477	45,739,406	283
Chromosome 21	41,249,279	1	40,885,132	41,249,279	205
Chromosome 22	38,430,240	1	38,145,909	38,430,240	212
unplaced	151,650,923	12,484	149,698,479	369,009	2,570

Assembly

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UCLA_HA_Equagga_1.0

See Genome Information for Equus quagga

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear