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MADL_Memer_1

Organism name:
Mercenaria mercenaria (northern quahog)
Infraspecific name:
Strain: notata
BioSample:
SAMN15214339
BioProject:
PRJNA638823
Submitter:
Stony Brook University
Date:
2022/02/01
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_021730395.1 (latest)
RefSeq assembly accession:
GCF_021730395.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAIXLV01
Assembly method:
wtdbg2 v. 0.0 (19830203); instaGRAAL v. AUGUST-2020
Expected final version:
yes
Genome coverage:
110.0x
Sequencing technology:
Pacbio Sequel II; Illumina HiSeq; PacBio Sequel

IDs: 11900291 [UID] 31301168 [GenBank] 39473948 [RefSeq]

See Genome Information for Mercenaria mercenaria

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,858,218,093
Total ungapped length1,858,201,276
Gaps between scaffolds0
Number of scaffolds4,976
Scaffold N5082,914,371
Scaffold L5010
Number of contigs4,978
Contig N5082,432,825
Contig L5010
Total number of chromosomes and plasmids20
Number of component sequences (WGS or clone)4,976

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_021730405.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM038759.1=NC_069361.10
Chromosome 2CM038760.1=NC_069362.10
Chromosome 3CM038761.1=NC_069363.10
Chromosome 4CM038762.1=NC_069364.10
Chromosome 5CM038763.1=NC_069365.10
Chromosome 6CM038764.1=NC_069366.10
Chromosome 7CM038765.1=NC_069367.10
Chromosome 8CM038766.1=NC_069368.10
Chromosome 9CM038767.1=NC_069369.10
Chromosome 10CM038768.1=NC_069370.10
Chromosome 11CM038769.1=NC_069371.10
Chromosome 12CM038770.1=NC_069372.10
Chromosome 13CM038771.1=NC_069373.10
Chromosome 14CM038772.1=NC_069374.10
Chromosome 15CM038773.1=NC_069375.10
Chromosome 16CM038774.1=NC_069376.10
Chromosome 17CM038775.1=NC_069377.10
Chromosome 18CM038776.1=NC_069378.10
Chromosome 19CM038777.1=NC_069379.10
unplacedn/an/an/a4,956

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All1,858,199,7284,9751,858,182,91182,914,37120
Chromosome 1121,110,6971121,110,697121,110,69700
Chromosome 2120,499,1051120,499,105120,499,10500
Chromosome 3104,084,4711104,067,654104,084,47120
Chromosome 4100,968,9951100,968,995100,968,99500
Chromosome 597,832,188197,832,18897,832,18800
Chromosome 691,270,759191,270,75991,270,75900
Chromosome 788,078,429188,078,42988,078,42900
Chromosome 886,514,381186,514,38186,514,38100
Chromosome 985,987,162185,987,16285,987,16200
Chromosome 1082,914,371182,914,37182,914,37100
Chromosome 1182,432,825182,432,82582,432,82500
Chromosome 1282,356,740182,356,74082,356,74000
Chromosome 1381,946,364181,946,36481,946,36400
Chromosome 1476,376,716176,376,71676,376,71600
Chromosome 1574,526,284174,526,28474,526,28400
Chromosome 1674,149,818174,149,81874,149,81800
Chromosome 1773,516,942173,516,94273,516,94200
Chromosome 1864,330,741164,330,74164,330,74100
Chromosome 1946,480,821146,480,82146,480,82100
unplaced222,821,9194,956222,821,91967,80100
MoleculeTotal
Length
Mitochondrion MT18,365