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xbMytCali1.0.p

Organism name:
Mytilus californianus (California mussel)
Isolate:
M0D057914Y
BioSample:
SAMN24505264
BioProject:
PRJNA796333
Submitter:
UCLA
Date:
2022/02/02
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_021869535.1 (latest)
RefSeq assembly accession:
GCF_021869535.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAKFGE01
Assembly method:
HiFiasm v. 0.16.1-r375; purge_dups v. 1.2.5; SALSA2 v. 2
Expected final version:
yes
Genome coverage:
39x
Sequencing technology:
PacBio Sequel II; PacBio Sequel IIe; Dovetail OmniC; Illumina NovaSeq
Linked assembly:
GCA_021869935.1 (alternate pseudohaplotype of diploid)

IDs: 11966251 [UID] 31441038 [GenBank] 37202168 [RefSeq]

See Genome Information for Mytilus californianus

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,651,950,171
Total ungapped length1,651,917,553
Gaps between scaffolds0
Number of scaffolds175
Scaffold N50117,871,512
Scaffold L507
Number of contigs499
Contig N5016,323,199
Contig L5030
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)175

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,651,950,1711751,651,917,553117,871,5123240