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Source database (GenBank or RefSeq) File type

sRhiTyp1.1

Organism name:

Rhincodon typus (whale shark)

Isolate:

Sex:

male

BioSample:

SAMN19519256

BioProject:

PRJNA703743

Submitter:

Squalomix

Date:

2022/02/03

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_021869965.1 (latest)

RefSeq assembly accession:

GCF_021869965.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAHMAH01

Assembly method:

Supernova v. 2.1.1; P_RNA_scaffolder v. commit 7941e0f; Tigmint v. 1.1.2; ARKS v. 1.1.0; 3D-DNA v. 180922

Expected final version:

yes

Genome coverage:

46.7x

Sequencing technology:

Illumina HiSeq

IDs: 11966261 [UID] 31441048 [GenBank] 33585118 [RefSeq]

See Genome Information for Rhincodon typus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_021869965.1	≠	GCF_021869965.1	sRhiTyp1.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,881,325,413
Total ungapped length	2,639,418,047
Gaps between scaffolds	0
Number of scaffolds	16,776
Scaffold N50	70,796,938
Scaffold L50	14
Number of contigs	111,998
Contig N50	48,454
Contig L50	15,962
Total number of chromosomes and plasmids	50
Number of component sequences (WGS or clone)	16,776

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM038798.1	=	NC_063332.1	0
Chromosome 2	CM038799.1	=	NC_063333.1	0
Chromosome 3	CM038800.1	=	NC_063334.1	0
Chromosome 4	CM038801.1	=	NC_063335.1	0
Chromosome 5	CM038802.1	=	NC_063336.1	0
Chromosome 6	CM038803.1	=	NC_063337.1	0
Chromosome 7	CM038804.1	=	NC_063338.1	0
Chromosome 8	CM038805.1	=	NC_063339.1	0
Chromosome 9	CM038806.1	=	NC_063340.1	0
Chromosome 10	CM038807.1	=	NC_063341.1	0
Chromosome 11	CM038808.1	=	NC_063342.1	0
Chromosome 12	CM038809.1	=	NC_063343.1	0
Chromosome 13	CM038810.1	=	NC_063344.1	0
Chromosome 14	CM038811.1	=	NC_063345.1	0
Chromosome 15	CM038812.1	=	NC_063346.1	0
Chromosome 16	CM038813.1	=	NC_063347.1	0
Chromosome 17	CM038814.1	=	NC_063348.1	0
Chromosome 18	CM038815.1	=	NC_063349.1	0
Chromosome 19	CM038816.1	=	NC_063350.1	0
Chromosome 20	CM038817.1	=	NC_063351.1	0
Chromosome 21	CM038818.1	=	NC_063352.1	0
Chromosome 22	CM038819.1	=	NC_063353.1	0
Chromosome 23	CM038820.1	=	NC_063354.1	0
Chromosome 24	CM038821.1	=	NC_063355.1	0
Chromosome 25	CM038822.1	=	NC_063356.1	0
Chromosome 26	CM038823.1	=	NC_063357.1	0
Chromosome 27	CM038824.1	=	NC_063358.1	0
Chromosome 28	CM038825.1	=	NC_063359.1	0
Chromosome 29	CM038826.1	=	NC_063360.1	0
Chromosome 30	CM038827.1	=	NC_063361.1	0
Chromosome 31	CM038828.1	=	NC_063362.1	0
Chromosome 32	CM038829.1	=	NC_063363.1	0
Chromosome 33	CM038830.1	=	NC_063364.1	0
Chromosome 34	CM038831.1	=	NC_063365.1	0
Chromosome 35	CM038832.1	=	NC_063366.1	0
Chromosome 36	CM038833.1	=	NC_063367.1	0
Chromosome 37	CM038834.1	=	NC_063368.1	0
Chromosome 38	CM038835.1	=	NC_063369.1	0
Chromosome 39	CM038836.1	=	NC_063370.1	0
Chromosome 40	CM038837.1	=	NC_063371.1	0
Chromosome 41	CM038838.1	=	NC_063372.1	0
Chromosome 42	CM038839.1	=	NC_063373.1	0
Chromosome 43	CM038840.1	=	NC_063374.1	0
Chromosome 44	CM038841.1	=	NC_063375.1	0
Chromosome 45	CM038842.1	=	NC_063376.1	0
Chromosome 46	CM038843.1	=	NC_063377.1	0
Chromosome 47	CM038844.1	=	NC_063378.1	0
Chromosome 48	CM038845.1	=	NC_063379.1	0
Chromosome 49	CM038846.1	=	NC_063380.1	0
Chromosome 50	CM038847.1	=	NC_063381.1	0
unplaced	n/a	n/a	n/a	16,726

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,881,325,413	16,776	2,639,418,047	70,796,938	95,222
Chromosome 1	178,270,547	1	164,738,702	178,270,547	4,747
Chromosome 2	150,996,143	1	139,860,963	150,996,143	3,985
Chromosome 3	128,789,535	1	120,049,719	128,789,535	3,281
Chromosome 4	121,396,903	1	112,942,172	121,396,903	3,109
Chromosome 5	120,224,078	1	111,260,350	120,224,078	3,218
Chromosome 6	108,604,316	1	101,152,376	108,604,316	2,858
Chromosome 7	99,305,088	1	92,321,461	99,305,088	2,679
Chromosome 8	94,387,307	1	87,932,666	94,387,307	2,861
Chromosome 9	92,565,115	1	85,468,798	92,565,115	2,537
Chromosome 10	81,141,125	1	74,864,203	81,141,125	2,323
Chromosome 11	76,122,505	1	70,459,325	76,122,505	2,124
Chromosome 12	73,789,946	1	67,978,615	73,789,946	1,956
Chromosome 13	73,097,125	1	67,584,556	73,097,125	1,922
Chromosome 14	70,796,938	1	65,645,505	70,796,938	1,831
Chromosome 15	63,236,534	1	58,337,883	63,236,534	1,682
Chromosome 16	62,395,636	1	57,831,308	62,395,636	1,759
Chromosome 17	61,341,648	1	57,186,678	61,341,648	1,682
Chromosome 18	58,822,999	1	53,955,908	58,822,999	1,519
Chromosome 19	57,795,565	1	53,363,334	57,795,565	1,641
Chromosome 20	52,588,957	1	49,009,007	52,588,957	1,510
Chromosome 21	50,898,788	1	47,025,174	50,898,788	1,447
Chromosome 22	50,604,709	1	46,399,599	50,604,709	1,389
Chromosome 23	47,588,200	1	44,054,197	47,588,200	1,442
Chromosome 24	47,473,090	1	43,789,791	47,473,090	1,393
Chromosome 25	45,173,798	1	41,649,608	45,173,798	1,363
Chromosome 26	44,624,306	1	41,547,253	44,624,306	1,414
Chromosome 27	44,568,192	1	41,192,603	44,568,192	1,289
Chromosome 28	42,705,481	1	39,178,152	42,705,481	1,384
Chromosome 29	39,912,113	1	36,631,493	39,912,113	1,302
Chromosome 30	38,339,965	1	35,644,814	38,339,965	1,073
Chromosome 31	38,044,941	1	35,407,022	38,044,941	1,108
Chromosome 32	37,918,681	1	35,043,151	37,918,681	996
Chromosome 33	35,614,625	1	32,890,027	35,614,625	1,066
Chromosome 34	26,773,444	1	24,724,344	26,773,444	830
Chromosome 35	25,067,188	1	22,624,296	25,067,188	924
Chromosome 36	23,949,891	1	21,486,049	23,949,891	820
Chromosome 37	21,820,606	1	19,550,932	21,820,606	868
Chromosome 38	20,856,141	1	19,085,014	20,856,141	816
Chromosome 39	18,121,539	1	16,214,841	18,121,539	821
Chromosome 40	17,442,415	1	16,093,289	17,442,415	675
Chromosome 41	12,227,147	1	10,759,650	12,227,147	1,010
Chromosome 42	11,734,621	1	10,980,542	11,734,621	447
Chromosome 43	11,519,040	1	10,191,125	11,519,040	749
Chromosome 44	11,235,856	1	10,360,175	11,235,856	988
Chromosome 45	11,054,923	1	9,718,137	11,054,923	660
Chromosome 46	10,821,110	1	10,000,100	10,821,110	862
Chromosome 47	9,681,543	1	8,897,334	9,681,543	704
Chromosome 48	8,145,935	1	7,452,286	8,145,935	604
Chromosome 49	4,160,643	1	3,871,549	4,160,643	281
Chromosome 50	3,491,000	1	2,884,586	3,491,000	1,429
unplaced	244,087,472	16,726	202,127,385	23,607	15,844

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sRhiTyp1.1

See Genome Information for Rhincodon typus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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