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iyNeoLeco1.1

Organism name:
Neodiprion lecontei (redheaded pine sawfly)
Isolate:
iyNeoLeco1
Sex:
male
BioSample:
SAMN23497074
BioProject:
PRJNA784628
Submitter:
United States Department of Agriculture
Date:
2022/02/03
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_021901455.1 (latest)
RefSeq assembly accession:
GCF_021901455.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAJNQH01
Assembly method:
HiFiASM v. 0.16.1-r375; Juicebox Assembly Toolkit v. 1.11
Expected final version:
yes
Genome coverage:
93.0x
Sequencing technology:
PacBio Sequel; Illumina NovaSeq

IDs: 11966201 [UID] 31440918 [GenBank] 31609738 [RefSeq]

See Genome Information for Neodiprion lecontei

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added to the contigs on January 2023. These are a small number of manual community annotations provided by the i5k Workspace@NAL.

Global statistics

Total sequence length272,073,844
Total ungapped length272,067,644
Gaps between scaffolds0
Number of scaffolds106
Scaffold N5041,410,448
Scaffold L504
Number of contigs168
Contig N508,158,086
Contig L5011
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)106

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_021901485.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM038785.1=NC_060260.10
Chromosome 2CM038786.1=NC_060261.10
Chromosome 3CM038787.1=NC_060262.10
Chromosome 4CM038788.1=NC_060263.10
Chromosome 5CM038789.1=NC_060264.10
Chromosome 6CM038790.1=NC_060265.10
Chromosome 7CM038791.1=NC_060266.10
unplacedn/an/an/a99

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All272,073,844106272,067,64441,410,448620
Chromosome 141,410,448141,410,04841,410,44840
Chromosome 244,328,875144,327,27544,328,875160
Chromosome 342,979,173142,978,47342,979,17370
Chromosome 441,965,994141,964,89441,965,994110
Chromosome 536,678,800136,678,10036,678,80070
Chromosome 631,718,875131,718,07531,718,87580
Chromosome 726,829,685126,828,78526,829,68590
unplaced6,161,994996,161,99476,21600