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ASM2195246v1

Organism name:
Actinobacillus pleuropneumoniae (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: K17
BioSample:
SAMN09909024
BioProject:
PRJNA487733
Submitter:
University of Bern
Date:
2022/02/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_021952465.1 (latest)
RefSeq assembly accession:
GCF_021952465.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. 1.3
Expected final version:
yes
Genome coverage:
506x
Sequencing technology:
Oxford Nanopore MinION

IDs: 11968421 [UID] 31498488 [GenBank] 31570778 [RefSeq]

See Genome Information for Actinobacillus pleuropneumoniae

There are 88 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_021952465.1-RS_2024_03_17
Annotation Date::03/17/2024 03:07:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,175
CDSs (total)::2,091
Genes (coding)::2,044
CDSs (with protein)::2,044
Genes (RNA)::84
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::61
ncRNAs::4
Pseudo Genes (total)::47
CDSs (without protein)::47
Pseudo Genes (ambiguous residues)::0 of 47
Pseudo Genes (frameshifted)::21 of 47
Pseudo Genes (incomplete)::13 of 47
Pseudo Genes (internal stop)::21 of 47
Pseudo Genes (multiple problems)::7 of 47
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,284,762
Total ungapped length2,284,762
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_021952475.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP069797.1=NZ_CP069797.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,284,762

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Actinobacillus pleuropneumoniaeActinobacillus pleuropneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000167095.1Actinobacillus pleuropneumoniae serovar 1 str. 4074type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000167095.1Actinobacillus pleuropneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9297.9197.58
Best-match type99.9297.9197.58

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna