Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

Hydra_105_v3

Organism name:

Hydra vulgaris (swiftwater hydra)

Isolate:

105

BioSample:

SAMN18321928

BioProject:

PRJNA703404

Submitter:

University of Vienna

Date:

2022/02/14

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_022113875.1 (latest)

RefSeq assembly accession:

GCF_022113875.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes 1 and 2

Data displayed for RefSeq version

WGS Project:

JAGKSS01

Assembly method:

Flye v. 2.8.3-b1695; 3D-DNA v. commit 2796c3b

Expected final version:

yes

Genome coverage:

29.0x

Sequencing technology:

PacBio Sequel

IDs: 12134601 [UID] 31806778 [GenBank] 32227518 [RefSeq]

See Genome Information for Hydra vulgaris

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_022113875.1	≠	GCF_022113875.1	Hydra_105_v3	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	819,402,624
Total ungapped length	817,163,865
Gaps between scaffolds	0
Number of scaffolds	56
Scaffold N50	55,045,248
Scaffold L50	7
Number of contigs	2,263
Contig N50	756,747
Contig L50	317
Total number of chromosomes and plasmids	17
Number of component sequences (WGS or clone)	56

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM039212.1	=	NC_061156.1	0
Chromosome 2	CM039213.1	=	NC_061157.1	0
Chromosome 3	CM039214.1	=	NC_061158.1	0
Chromosome 4	CM039215.1	=	NC_061159.1	0
Chromosome 5	CM039216.1	=	NC_061160.1	0
Chromosome 6	CM039217.1	=	NC_061161.1	0
Chromosome 7	CM039218.1	=	NC_061162.1	0
Chromosome 8	CM039219.1	=	NC_061163.1	0
Chromosome 9	CM039220.1	=	NC_061164.1	0
Chromosome 10	CM039221.1	=	NC_061165.1	0
Chromosome 11	CM039222.1	=	NC_061166.1	0
Chromosome 12	CM039223.1	=	NC_061167.1	0
Chromosome 13	CM039224.1	=	NC_061168.1	0
Chromosome 14	CM039225.1	=	NC_061169.1	0
Chromosome 15	CM039226.1	=	NC_061170.1	0
unplaced	n/a	n/a	n/a	39

Molecule name	GenBank ID		RefSeq ID
Mitochondrion 1	BN001179.1	=	NC_011220.1
Mitochondrion 2	BN001180.1	=	NC_011221.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	819,386,744	54	817,147,985	55,045,248	2,207
Chromosome 1	55,455,600	1	55,298,642	55,455,600	157
Chromosome 2	77,975,161	1	77,857,199	77,975,161	118
Chromosome 3	62,712,309	1	62,579,197	62,712,309	125
Chromosome 4	65,793,045	1	65,587,107	65,793,045	206
Chromosome 5	60,726,905	1	60,585,956	60,726,905	141
Chromosome 6	59,913,004	1	59,763,267	59,913,004	148
Chromosome 7	55,045,248	1	54,901,275	55,045,248	143
Chromosome 8	52,021,744	1	51,905,248	52,021,744	112
Chromosome 9	53,447,792	1	53,283,857	53,447,792	164
Chromosome 10	50,363,522	1	50,179,640	50,363,522	184
Chromosome 11	51,488,711	1	51,332,753	51,488,711	156
Chromosome 12	49,247,934	1	49,105,003	49,247,934	143
Chromosome 13	42,497,472	1	42,360,540	42,497,472	137
Chromosome 14	39,157,883	1	39,036,932	39,157,883	121
Chromosome 15	42,201,620	1	42,033,575	42,201,620	151
unplaced	1,338,794	39	1,337,794	39,579	1

Molecule	Total Length
All	15,880
Mitochondrion 1	8,194
Mitochondrion 2	7,686

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

Hydra_105_v3

See Genome Information for Hydra vulgaris

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear