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Source database (GenBank or RefSeq) File type

ASM2237912v1

Organism name:

Scophthalmus maximus (turbot)

Infraspecific name:

Strain: ysfricsl-2021

Sex:

female

BioSample:

SAMN24450573

BioProject:

PRJNA792617

Submitter:

Yellow Sea fisheries Research Institution

Date:

2022/02/24

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_022379125.1 (latest)

RefSeq assembly accession:

GCF_022379125.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAJTWG01

Assembly method:

Flye v. 2.7

Expected final version:

yes

Genome coverage:

265.0x

Sequencing technology:

PacBio Sequel

IDs: 12221661 [UID] 32002528 [GenBank] 32497088 [RefSeq]

See Genome Information for Scophthalmus maximus

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_022379125.1	≠	GCF_022379125.1	ASM2237912v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	538,234,718
Total ungapped length	538,234,718
Gaps between scaffolds	0
Number of scaffolds	28
Scaffold N50	25,762,658
Scaffold L50	10
Number of contigs	28
Contig N50	25,762,658
Contig L50	10
Total number of chromosomes and plasmids	23
Number of component sequences (WGS or clone)	28

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM039404.1	=	NC_061515.1	0
Chromosome 2	CM039405.1	=	NC_061516.1	0
Chromosome 3	CM039406.1	=	NC_061517.1	0
Chromosome 4	CM039407.1	=	NC_061518.1	0
Chromosome 5	CM039408.1	=	NC_061519.1	0
Chromosome 6	CM039409.1	=	NC_061520.1	0
Chromosome 7	CM039410.1	=	NC_061521.1	0
Chromosome 8	CM039411.1	=	NC_061522.1	0
Chromosome 9	CM039412.1	=	NC_061523.1	0
Chromosome 10	CM039413.1	=	NC_061524.1	0
Chromosome 11	CM039414.1	=	NC_061525.1	0
Chromosome 12	CM039415.1	=	NC_061526.1	0
Chromosome 13	CM039416.1	=	NC_061527.1	0
Chromosome 14	CM039417.1	=	NC_061528.1	0
Chromosome 15	CM039418.1	=	NC_061529.1	0
Chromosome 16	CM039419.1	=	NC_061530.1	0
Chromosome 17	CM039420.1	=	NC_061531.1	0
Chromosome 18	CM039421.1	=	NC_061532.1	0
Chromosome 19	CM039422.1	=	NC_061533.1	0
Chromosome 20	CM039423.1	=	NC_061534.1	0
Chromosome 21	CM039424.1	=	NC_061535.1	0
Chromosome 22	CM039425.1	=	NC_061536.1	0
unplaced	n/a	n/a	n/a	5

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50
All	538,217,135	27	538,217,135	25,762,658
Chromosome 1	31,671,883	1	31,671,883	31,671,883
Chromosome 2	31,510,742	1	31,510,742	31,510,742
Chromosome 3	30,530,411	1	30,530,411	30,530,411
Chromosome 4	29,155,724	1	29,155,724	29,155,724
Chromosome 5	28,256,940	1	28,256,940	28,256,940
Chromosome 6	27,714,339	1	27,714,339	27,714,339
Chromosome 7	27,104,349	1	27,104,349	27,104,349
Chromosome 8	26,115,799	1	26,115,799	26,115,799
Chromosome 9	25,907,553	1	25,907,553	25,907,553
Chromosome 10	25,762,658	1	25,762,658	25,762,658
Chromosome 11	25,341,804	1	25,341,804	25,341,804
Chromosome 12	25,082,805	1	25,082,805	25,082,805
Chromosome 13	24,998,336	1	24,998,336	24,998,336
Chromosome 14	22,997,681	1	22,997,681	22,997,681
Chromosome 15	22,729,522	1	22,729,522	22,729,522
Chromosome 16	21,454,931	1	21,454,931	21,454,931
Chromosome 17	20,759,272	1	20,759,272	20,759,272
Chromosome 18	20,511,620	1	20,511,620	20,511,620
Chromosome 19	20,249,393	1	20,249,393	20,249,393
Chromosome 20	18,467,213	1	18,467,213	18,467,213
Chromosome 21	16,027,805	1	16,027,805	16,027,805
Chromosome 22	15,408,234	1	15,408,234	15,408,234
unplaced	458,121	5	458,121	147,496

Assembly

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ASM2237912v1

See Genome Information for Scophthalmus maximus

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear