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Source database (GenBank or RefSeq) File type

HSTE1.2

Organism name:

Hippoglossus stenolepis (Pacific halibut)

Isolate:

QCI-W04-F060

Sex:

female

BioSample:

SAMN29538134

BioProject:

PRJNA622249

Submitter:

International Pacific Halibut Commission

Date:

2022/03/10

Release type:

minor

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_022539355.2 (latest)

RefSeq assembly accession:

GCF_022539355.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAKRZP01

Assembly method:

Flye v. 2.9; Juicer v. 1.6; 3D-DNA v. 201008

Expected final version:

yes

Genome coverage:

91.0x

Sequencing technology:

Oxford Nanopore GridION; Oxford Nanopore PromethION; Illumina NovaSeq

IDs: 12415341 [UID] 32499608 [GenBank] 32499628 [RefSeq]

See Genome Information for Hippoglossus stenolepis

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_022539355.2	≠	GCF_022539355.2	HSTE1.2	Chromosome	Latest GenBank, Latest RefSeq
GCA_022539355.1	n/a	n/a	HSTE1.1	Chromosome	Replaced GenBank

Comment

In March 2022 5 sequences were suppressed because they were found to be contaminants.
This genome is an update to JABBIT000000000

Global statistics

Total sequence length	602,165,188
Total ungapped length	601,839,366
Gaps between scaffolds	0
Number of scaffolds	53
Scaffold N50	27,288,303
Scaffold L50	11
Number of contigs	1,184
Contig N50	4,638,087
Contig L50	38
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	53

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM039694.1	=	NC_061483.1	0
Chromosome 2	CM039695.1	=	NC_061484.1	0
Chromosome 3	CM039696.1	=	NC_061485.1	0
Chromosome 4	CM039697.1	=	NC_061486.1	0
Chromosome 5	CM039698.1	=	NC_061487.1	0
Chromosome 6	CM039699.1	=	NC_061488.1	0
Chromosome 7	CM039700.1	=	NC_061489.1	0
Chromosome 8	CM039701.1	=	NC_061490.1	0
Chromosome 9	CM039702.1	=	NC_061491.1	0
Chromosome 10	CM039703.1	=	NC_061492.1	0
Chromosome 11	CM039704.1	=	NC_061493.1	0
Chromosome 12	CM039705.1	=	NC_061494.1	0
Chromosome 13	CM039706.1	=	NC_061495.1	0
Chromosome 14	CM039707.1	=	NC_061496.1	0
Chromosome 15	CM039708.1	=	NC_061497.1	0
Chromosome 16	CM039709.1	=	NC_061498.1	0
Chromosome 17	CM039710.1	=	NC_061499.1	0
Chromosome 18	CM039711.1	=	NC_061500.1	0
Chromosome 19	CM039712.1	=	NC_061501.1	0
Chromosome 20	CM039713.1	=	NC_061502.1	0
Chromosome 21	CM039714.1	=	NC_061503.1	0
Chromosome 22	CM039715.1	=	NC_061504.1	0
Chromosome 23	CM039716.1	=	NC_061505.1	0
Chromosome 24	CM039717.1	=	NC_061506.1	0
unplaced	n/a	n/a	n/a	28

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	602,147,347	52	601,821,525	27,288,303	1,131
Chromosome 1	32,845,235	1	32,828,770	32,845,235	54
Chromosome 2	32,262,650	1	32,220,042	32,262,650	143
Chromosome 3	31,235,357	1	31,212,060	31,235,357	69
Chromosome 4	28,897,756	1	28,886,859	28,897,756	41
Chromosome 5	29,170,857	1	29,159,857	29,170,857	42
Chromosome 6	28,229,454	1	28,216,168	28,229,454	41
Chromosome 7	28,174,910	1	28,157,713	28,174,910	52
Chromosome 8	27,367,920	1	27,354,996	27,367,920	38
Chromosome 9	29,329,910	1	29,315,947	29,329,910	44
Chromosome 10	27,288,303	1	27,262,353	27,288,303	117
Chromosome 11	25,468,064	1	25,448,073	25,468,064	68
Chromosome 12	25,132,731	1	25,129,169	25,132,731	17
Chromosome 13	24,770,608	1	24,765,511	24,770,608	19
Chromosome 14	28,479,552	1	28,468,353	28,479,552	40
Chromosome 15	25,155,020	1	25,143,029	25,155,020	36
Chromosome 16	23,268,637	1	23,256,004	23,268,637	35
Chromosome 17	22,875,723	1	22,861,926	22,875,723	34
Chromosome 18	21,182,577	1	21,175,956	21,182,577	27
Chromosome 19	20,810,600	1	20,802,301	20,810,600	23
Chromosome 20	21,255,706	1	21,250,413	21,255,706	17
Chromosome 21	20,593,300	1	20,589,601	20,593,300	17
Chromosome 22	18,680,547	1	18,675,148	18,680,547	18
Chromosome 23	17,159,251	1	17,137,497	17,159,251	62
Chromosome 24	11,267,222	1	11,265,222	11,267,222	8
unplaced	1,245,457	28	1,238,557	255,824	69

Assembly

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HSTE1.2

See Genome Information for Hippoglossus stenolepis

Pathogen Detection Resources

History (Show revision history)

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Assembly Unit Name
Primary Assembly
non-nuclear