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APGP_CSIRO_Lrig_0.1

Organism name:
Lolium rigidum (monocots)
Isolate:
FL_2022
BioSample:
SAMN25144995
BioProject:
PRJNA799061
Submitter:
Australian Pest Genome Partnership
Date:
2022/03/14
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_022539505.1 (latest)
RefSeq assembly accession:
GCF_022539505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAKKIG01
Assembly method:
Flye v. 2.9; PurgeDups v. 1.2.5; Racon v. 1.4.22; Polca v. 4.0.7; ALLHiC v. 1
Expected final version:
yes
Genome coverage:
41.0x
Sequencing technology:
Oxford Nanopore PromethION; Oxford Nanopore MinION

IDs: 12314061 [UID] 32264638 [GenBank] 32410718 [RefSeq]

See Genome Information for Lolium rigidum

History (Show revision history)

Comment

Global statistics

Total sequence length2,438,467,165
Total ungapped length2,435,275,265
Gaps between scaffolds0
Number of scaffolds1,764
Scaffold N50361,799,021
Scaffold L504
Number of contigs33,683
Contig N50113,670
Contig L506,160
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)1,764

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_022539515.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM040108.1=NC_061508.10
Chromosome 2CM040109.1=NC_061509.10
Chromosome 3CM040110.1=NC_061510.10
Chromosome 4CM040111.1=NC_061511.10
Chromosome 5CM040112.1=NC_061512.10
Chromosome 6CM040113.1=NC_061513.10
Chromosome 7CM040114.1=NC_061514.10
unplacedn/an/an/a1,757

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,438,467,1651,7642,435,275,265361,799,02131,9190
Chromosome 1364,718,9151364,226,115364,718,9154,9280
Chromosome 2293,451,8921293,054,192293,451,8923,9770
Chromosome 3413,347,2661412,774,366413,347,2665,7290
Chromosome 4283,092,4991282,721,399283,092,4993,7110
Chromosome 5271,427,0521271,051,652271,427,0523,7540
Chromosome 6361,799,0211361,320,521361,799,0214,7850
Chromosome 7362,452,2721361,948,772362,452,2725,0350
unplaced88,178,2481,75788,178,24871,14100