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ilHelZeax1.1

Organism name:
Helicoverpa zea (corn earworm)
Isolate:
HzStark_Cry1AcR
Sex:
male
BioSample:
SAMN25818888
BioProject:
PRJNA807638
Submitter:
United States Department of Agriculture
Date:
2022/03/18
Assembly type:
haploid (principal pseudohaplotype of diploid)
Release type:
minor
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_022581195.1 (latest)
RefSeq assembly accession:
GCF_022581195.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAKYJW01
Assembly method:
FALCON v. 1.8.1; FALCON-Unzip v. 1.3.7; purge_dups v. 1.2.5; bwa-mem v. 2.2.1; Juicebox v. 1.11.08; Arrow gcpp v. 2.0.2; FreeBayes v. 1.0.2; Merqury v. 1.1
Expected final version:
yes
Genome coverage:
144x
Sequencing technology:
PacBio Sequel II CLR; Illumina NovaSeq
Linked assembly:
GCA_022581175.1 (alternate pseudohaplotype of diploid)

IDs: 12343441 [UID] 32342308 [GenBank] 32411878 [RefSeq]

See Genome Information for Helicoverpa zea

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length375,180,944
Total ungapped length375,178,736
Gaps between scaffolds0
Number of scaffolds43
Scaffold N5012,841,304
Scaffold L5014
Number of contigs66
Contig N5010,871,041
Contig L5015
Total number of chromosomes and plasmids32
Number of component sequences (WGS or clone)43

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_022581205.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM040203.1=NC_061452.10
Chromosome 2CM040204.1=NC_061453.10
Chromosome 3CM040205.1=NC_061454.10
Chromosome 4CM040206.1=NC_061455.10
Chromosome 5CM040207.1=NC_061456.10
Chromosome 6CM040208.1=NC_061457.10
Chromosome 7CM040209.1=NC_061458.10
Chromosome 8CM040210.1=NC_061459.10
Chromosome 9CM040211.1=NC_061460.10
Chromosome 10CM040212.1=NC_061461.10
Chromosome 11CM040213.1=NC_061462.10
Chromosome 12CM040214.1=NC_061463.10
Chromosome 13CM040215.1=NC_061464.10
Chromosome 14CM040216.1=NC_061465.10
Chromosome 15CM040217.1=NC_061466.10
Chromosome 16CM040218.1=NC_061467.10
Chromosome 17CM040219.1=NC_061468.10
Chromosome 18CM040220.1=NC_061469.10
Chromosome 19CM040221.1=NC_061470.10
Chromosome 20CM040222.1=NC_061471.10
Chromosome 21CM040223.1=NC_061472.10
Chromosome 22CM040224.1=NC_061473.10
Chromosome 23CM040225.1=NC_061474.10
Chromosome 24CM040226.1=NC_061475.10
Chromosome 25CM040227.1=NC_061476.10
Chromosome 26CM040228.1=NC_061477.10
Chromosome 27CM040229.1=NC_061478.10
Chromosome 28CM040230.1=NC_061479.10
Chromosome 29CM040231.1=NC_061480.10
Chromosome 30CM040232.1=NC_061481.10
Chromosome 31CM040233.1=NC_061482.10
unplacedn/an/an/a11

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All375,165,59342375,163,38512,841,304230
Chromosome 115,512,169115,512,16915,512,16900
Chromosome 215,061,584115,061,58415,061,58400
Chromosome 314,695,159114,695,15914,695,15900
Chromosome 414,165,716114,165,42014,165,71630
Chromosome 514,051,263114,051,26314,051,26300
Chromosome 614,023,251114,023,25114,023,25100
Chromosome 713,649,923113,649,82513,649,92310
Chromosome 813,649,271113,649,17113,649,27110
Chromosome 913,615,264113,615,26413,615,26400
Chromosome 1013,258,385113,258,28513,258,38510
Chromosome 1113,088,840113,088,54713,088,84030
Chromosome 1212,972,780112,972,78012,972,78000
Chromosome 1312,841,304112,841,20412,841,30410
Chromosome 1412,757,947112,757,94712,757,94700
Chromosome 1512,605,921112,605,72412,605,92120
Chromosome 1612,332,656112,332,42512,332,65630
Chromosome 1712,254,882112,254,88212,254,88200
Chromosome 1812,245,473112,245,47312,245,47300
Chromosome 1911,629,846111,629,74611,629,84610
Chromosome 2011,599,754111,599,75411,599,75400
Chromosome 2111,461,517111,461,42011,461,51710
Chromosome 2210,871,041110,871,04110,871,04100
Chromosome 2310,422,137110,422,13710,422,13700
Chromosome 249,742,50819,742,3099,742,50820
Chromosome 259,280,48719,280,3879,280,48710
Chromosome 269,278,41319,278,4139,278,41300
Chromosome 277,355,03317,355,0337,355,03300
Chromosome 287,211,80017,211,8007,211,80000
Chromosome 297,203,47817,203,3817,203,47810
Chromosome 306,316,81316,316,7136,316,81310
Chromosome 3118,805,280118,805,18018,805,28010
unplaced1,205,698111,205,698250,00000
MoleculeTotal
Length
Mitochondrion MT15,351