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icAntGran1.3

Organism name:
Anthonomus grandis grandis (boll weevil)
Sex:
male
BioSample:
SAMN21902058
BioProject:
PRJNA767408
Submitter:
United States Department of Agriculture
Date:
2022/08/03
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_022605725.3 (latest)
RefSeq assembly accession:
GCF_022605725.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAKYJU02
Assembly method:
HiFiASM v. 0.14.2-r315
Expected final version:
yes
Genome coverage:
21x
Sequencing technology:
PacBio Sequel
Linked assembly:
GCA_022605985.2 (alternate pseudohaplotype of diploid)

IDs: 13470381 [UID] 35138788 [GenBank] 35298698 [RefSeq]

See Genome Information for Anthonomus grandis

Pathogen Detection Resources

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length697,452,952
Total ungapped length697,426,911
Gaps between scaffolds0
Number of scaffolds304
Scaffold N5036,454,210
Scaffold L508
Number of contigs568
Contig N506,865,999
Contig L5032
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)304

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_022606015.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM040130.2=NC_065546.19
Chromosome 2CM040131.2=NC_065547.10
Chromosome 3CM040132.2=NC_065548.10
Chromosome 4CM040133.2=NC_065549.10
Chromosome 5CM040134.2=NC_065550.10
Chromosome 6CM040135.2=NC_065551.10
Chromosome 7CM040136.2=NC_065552.10
Chromosome 8CM040137.2=NC_065553.10
Chromosome 9CM040138.2=NC_065554.10
Chromosome 10CM040139.2=NC_065555.10
Chromosome 11CM040140.2=NC_065556.10
Chromosome 12CM040141.2=NC_065557.10
Chromosome 13CM040142.2=NC_065558.10
Chromosome 14CM040143.2=NC_065559.10
Chromosome 15CM040144.2=NC_065560.10
Chromosome 16CM040145.2=NC_065561.10
Chromosome 17CM040146.2=NC_065562.10
Chromosome 18CM040147.2=NC_065563.10
Chromosome 19CM040148.2=NC_065564.10
Chromosome 20CM040149.2=NC_065565.10
Chromosome 21CM040150.2=NC_065566.10
Chromosome 22CM044910.1=NC_065567.10
Chromosome 23CM044911.1=NC_065568.10
Chromosome 24CM044912.1=NC_065569.10
unplacedn/an/an/a271

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule697,452,952304697,426,91136,454,2102640
Chromosome 1AllAssembled moleculeUnlocalized scaffolds60,887,05358,451,0322,436,021101960,882,25358,447,6322,434,62158,451,03258,451,032282,939483414000
Chromosome 2Assembled molecule48,916,213148,914,91348,916,213130
Chromosome 3Assembled molecule47,856,352147,854,51847,856,352190
Chromosome 4Assembled molecule42,446,078142,445,03742,446,078110
Chromosome 5Assembled molecule38,246,408138,244,91938,246,408150
Chromosome 6Assembled molecule36,766,841136,766,16336,766,84180
Chromosome 7Assembled molecule36,454,210136,454,01036,454,21020
Chromosome 8Assembled molecule35,610,044135,609,84435,610,04420
Chromosome 9Assembled molecule30,977,180130,975,95130,977,180130
Chromosome 10Assembled molecule30,046,273130,044,77330,046,273150
Chromosome 11Assembled molecule30,288,949130,288,34930,288,94960
Chromosome 12Assembled molecule30,256,041130,255,74130,256,04130
Chromosome 13Assembled molecule27,480,715127,480,41527,480,71530
Chromosome 14Assembled molecule23,461,063123,460,46323,461,06360
Chromosome 15Assembled molecule22,575,984122,575,58422,575,98440
Chromosome 16Assembled molecule22,312,771122,312,37122,312,77140
Chromosome 17Assembled molecule20,361,090120,358,56120,361,090250
Chromosome 18Assembled molecule13,897,468113,897,16813,897,46830
Chromosome 19Assembled molecule13,316,270113,314,67013,316,270160
Chromosome 20Assembled molecule8,323,00618,321,8068,323,006120
Chromosome 21Assembled molecule1,973,87711,973,7771,973,87710
Chromosome 22Assembled molecule48,409,349148,406,74948,409,349260
Chromosome 23Assembled molecule1,321,27711,321,1771,321,27710
Chromosome 24Assembled molecule3,182,89613,182,1963,182,89670
unplacedAssembled molecule22,085,54427122,085,503180,68110